Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 7.3e-112 407.5 252 100.0
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.8e-111 405.6 252 99.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 6.5e-76 288.1 247 71.3
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.2e-74 283.9 253 74.7
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 2.2e-71 273.1 251 68.1
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.8e-71 272.7 252 69.4
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.1e-70 270.8 250 59.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 2.5e-67 259.6 250 69.2
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 5.5e-67 258.5 252 69.0
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-66 257.3 255 72.2
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-66 257.3 255 72.2
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 2.1e-66 256.5 252 61.1
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.5e-64 250.4 253 68.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 7.4e-64 248.1 252 65.1
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.3e-63 247.3 251 64.9
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.2e-63 246.5 254 59.1
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 3.7e-63 245.7 255 57.3
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 3.1e-62 242.7 252 61.1
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 5.3e-62 241.9 251 66.9
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 7.0e-62 241.5 250 66.8
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 9.1e-62 241.1 258 64.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 2.0e-61 240.0 249 59.0
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.6e-61 239.6 244 69.7
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.0e-60 237.7 253 61.3
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.3e-60 237.3 250 65.2
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.3e-60 237.3 253 61.3
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.4e-59 233.8 250 54.4
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.5e-59 233.0 252 64.3
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 3.2e-59 232.6 260 64.2
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.2e-59 232.6 260 64.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.2e-59 232.3 252 59.9
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.6e-58 230.3 250 54.8
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 8.0e-58 228.0 249 53.4
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.4e-57 227.3 250 63.2
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.3e-57 226.5 254 52.8
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 3.9e-57 225.7 222 68.9
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 6.7e-57 224.9 248 62.9
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.1e-56 224.2 247 55.1
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.0e-56 223.4 258 63.2
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.4e-56 222.2 260 53.5
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.4e-56 222.2 251 54.2
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.3e-55 220.7 259 52.9
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.7e-55 220.3 257 61.5
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.2e-55 219.9 253 62.5
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.2e-55 219.9 275 60.4
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.2e-55 219.9 254 60.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 4.8e-55 218.8 257 61.1
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.3e-55 218.4 222 68.5
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 6.3e-55 218.4 248 61.7
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.8e-54 216.9 221 66.5
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.4e-54 216.5 245 63.3
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 2.4e-54 216.5 252 62.7
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 3.1e-54 216.1 259 64.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.1e-54 216.1 248 61.7
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.3e-54 215.3 255 54.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 7.0e-54 214.9 246 52.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 9.1e-54 214.5 257 49.4
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 9.1e-54 214.5 257 63.8
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.2e-53 214.2 248 52.0
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.5e-53 212.6 246 60.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 5.9e-53 211.8 255 52.5
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 7.7e-53 211.5 251 61.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 7.7e-53 211.5 255 51.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 7.7e-53 211.5 259 51.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 1.0e-52 211.1 244 62.7
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.3e-52 210.7 247 52.2
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.7e-52 210.3 252 60.3
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.7e-52 210.3 220 64.1
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.7e-52 210.3 256 60.5
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 5.0e-52 208.8 259 58.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.1e-51 207.6 257 58.0
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.1e-51 207.6 257 58.8
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.1e-51 207.6 257 58.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.5e-51 207.2 207 68.1
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.5e-51 207.2 251 57.4
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.9e-51 206.8 257 58.8
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.9e-51 206.8 258 49.6
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 3.2e-51 206.1 248 60.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.2e-51 205.7 257 58.8
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.1e-50 203.4 262 49.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 2.7e-50 203.0 260 50.0
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 6.1e-50 201.8 260 56.2
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 6.1e-50 201.8 267 49.4
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 8.0e-50 201.4 211 65.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.0e-49 201.1 227 63.0
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.4e-49 200.7 213 65.7
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.8e-49 200.3 230 61.7
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.3e-49 199.9 262 58.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-48 197.6 247 49.8
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-48 197.2 262 58.0
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.6e-48 196.4 253 58.5
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.6e-48 196.4 255 58.4
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.4e-48 195.7 260 57.7
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 5.7e-48 195.3 129 80.6
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 9.7e-48 194.5 256 57.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 6.3e-47 191.8 241 48.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 9.1e-46 188.0 251 47.4
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 9.1e-46 188.0 262 55.3
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-45 187.6 247 48.2
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.7e-45 186.4 262 53.8
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.0e-44 184.5 251 58.2
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.5e-43 180.6 263 52.9
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 4.2e-43 179.1 256 57.0
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.5e-43 178.7 265 54.3
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.8e-41 173.7 140 68.6
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 2.3e-41 173.3 242 50.8
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 6.8e-41 171.8 141 63.1
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 2.6e-40 169.9 216 48.1
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 5.7e-40 168.7 207 50.2
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 9.8e-40 167.9 213 51.2
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.3e-39 167.5 143 63.6
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.3e-39 167.5 240 48.3
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-39 166.8 248 44.4
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-39 166.8 248 44.4
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.4e-38 164.1 189 59.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 3.1e-38 162.9 217 59.4
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 4.2e-35 152.5 240 47.5
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 190 57.4
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 7.5e-32 141.7 118 59.3
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.3e-27 125.9 136 51.5
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 2.3e-25 120.2 98 68.4
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.9e-25 118.2 84 73.8
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 6.0e-21 105.5 250 30.8
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.6e-20 101.7 82 68.3
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.6e-19 99.0 204 29.4
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.6e-18 97.4 230 30.4
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.2e-16 91.3 216 28.2
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.3e-15 87.8 181 28.7
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 2.4e-14 83.6 81 56.8
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.5e-11 74.3 83 53.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.6e-11 72.4 203 26.6
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 6.2e-10 68.9 55 63.6
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.4e-08 63.2 80 45.0
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.4e-08 63.2 229 25.8
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.3e-07 61.2 256 25.0
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 2.2e-07 60.5 59 55.9
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.4e-06 55.8 240 24.6


User provided reference genes

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