Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 4.0e-117 424.9 229 100.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.9e-97 357.5 230 83.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.1e-95 353.6 229 83.0
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.1e-93 347.1 229 79.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.0e-93 344.0 236 79.7
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.0e-92 342.8 230 77.0
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 8.5e-91 337.4 231 79.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 8.5e-91 337.4 232 69.8
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.9e-90 336.3 229 77.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.2e-90 334.3 237 70.9
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 4.6e-89 331.6 232 75.9
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.0e-88 330.5 229 76.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.7e-88 327.8 232 74.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.7e-86 323.2 231 75.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.7e-86 323.2 229 75.5
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.7e-86 322.0 220 72.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.8e-86 321.6 231 75.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 8.2e-86 320.9 229 70.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.4e-85 320.1 235 75.3
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 3.1e-85 318.9 232 71.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 5.3e-85 318.2 263 63.9
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 9.1e-85 317.4 231 74.5
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.5e-84 316.6 232 74.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 4.5e-84 315.1 230 67.4
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.0e-83 313.9 230 67.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.3e-83 313.5 240 65.8
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.3e-83 313.5 223 75.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.7e-83 313.2 225 75.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.1e-82 310.5 232 73.3
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.5e-82 309.3 242 65.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.4e-82 307.4 229 74.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 2.1e-81 306.2 229 69.9
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.1e-81 306.2 237 68.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.6e-81 305.4 229 72.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.7e-81 305.1 231 68.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.7e-81 305.1 219 68.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.0e-80 303.9 226 72.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.4e-80 303.5 226 72.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.4e-80 303.5 238 63.9
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.0e-80 302.4 231 68.0
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.0e-80 302.4 222 68.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 6.7e-80 301.2 217 75.6
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 6.7e-80 301.2 227 73.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.7e-80 301.2 221 69.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.5e-79 300.1 223 69.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.0e-79 299.7 226 70.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.3e-79 298.9 230 71.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.3e-79 298.9 225 72.0
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.7e-79 298.1 229 69.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.7e-78 296.6 233 61.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.8e-78 295.8 225 64.4
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.8e-78 295.8 224 71.0
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.7e-78 295.4 229 69.9
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 3.7e-78 295.4 224 63.8
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 4.8e-78 295.0 223 71.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 8.2e-78 294.3 229 69.4
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 8.2e-78 294.3 220 71.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.8e-77 293.1 225 70.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-77 292.7 224 70.1
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.1e-77 292.4 222 70.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.3e-77 291.6 227 70.5
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-76 290.4 223 71.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-76 290.0 234 65.8
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 7.7e-76 287.7 232 69.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.3e-75 287.0 227 68.7
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.7e-75 286.6 177 76.3
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-75 286.6 223 71.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.9e-75 285.8 221 60.2
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.5e-75 284.6 225 67.1
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 8.5e-75 284.3 229 60.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 8.5e-75 284.3 226 69.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.1e-74 283.9 231 66.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-74 283.5 231 69.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.2e-74 282.0 223 68.2
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 7.2e-74 281.2 142 95.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.4e-74 280.8 231 64.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 9.4e-74 280.8 236 65.3
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.2e-73 280.4 222 61.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.7e-73 279.3 213 63.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 3.6e-73 278.9 245 64.9
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 6.1e-73 278.1 225 60.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.0e-72 277.3 225 64.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.4e-72 276.9 224 63.8
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-72 276.9 225 59.1
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.8e-72 276.6 225 58.7
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-72 276.2 233 60.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.3e-72 276.2 221 68.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.0e-72 275.8 222 58.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.9e-72 275.4 224 58.9
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 8.8e-72 274.2 225 60.4
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-71 273.9 252 61.1
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 3.3e-71 272.3 221 62.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 3.3e-71 272.3 221 62.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.4e-71 271.9 265 58.9
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.4e-71 271.9 230 67.0
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-70 270.4 224 57.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.7e-70 268.9 224 58.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-70 268.9 229 60.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.7e-70 268.9 258 58.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-70 268.9 234 62.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 3.7e-70 268.9 229 67.2
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 4.8e-70 268.5 242 64.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.8e-70 268.5 225 66.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 6.3e-70 268.1 203 68.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.4e-69 266.2 217 68.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.8
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.8
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.1e-69 265.4 276 53.6
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.2e-68 263.8 230 56.1
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.0e-68 263.1 240 55.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.0e-68 263.1 215 61.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.6e-68 262.7 161 75.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.6e-68 262.7 227 62.1
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-68 262.7 227 62.1
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-68 262.7 227 62.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.5e-68 261.9 215 60.9
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.9e-68 261.5 209 67.0
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.9e-68 261.5 227 62.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 5.9e-68 261.5 269 58.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.0e-67 260.8 170 72.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.3e-67 260.4 197 74.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-67 258.1 227 61.7
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.1e-66 257.3 221 60.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.9e-66 256.5 220 61.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.2e-66 255.4 185 71.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.1e-65 253.1 222 57.2
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 8.0e-65 251.1 245 55.1
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.4e-64 250.4 177 63.3
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 8.8e-64 247.7 143 80.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.3e-62 241.5 224 54.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.4e-61 240.4 141 81.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.4e-61 239.6 249 52.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.0e-60 236.5 267 53.6
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.7e-60 236.1 242 53.7
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.5e-60 235.3 147 74.8
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.9e-60 235.0 240 53.3
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.7e-59 233.4 146 74.7
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.6e-57 226.9 216 56.5
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 9.1e-53 211.1 131 74.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-52 208.8 278 45.7
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.6e-51 204.5 148 64.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.6e-49 199.1 130 73.8
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-47 194.1 141 64.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.8e-46 189.5 127 70.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.3e-43 179.9 143 55.2
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 6.1e-41 171.8 122 64.8
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.9e-38 162.2 98 75.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.0e-37 158.3 227 46.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.0e-35 154.5 147 60.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.5e-34 149.8 99 68.7
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.8e-28 128.3 98 67.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.6e-25 120.6 191 37.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 4.0e-24 115.9 115 53.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.1e-21 105.9 154 37.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.0e-19 101.3 99 70.7
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 6.6e-19 98.6 123 38.2
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.6e-17 92.8 77 54.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 2.4e-16 90.1 83 69.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 8.9e-16 88.2 127 36.2
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 8.9e-16 88.2 91 61.5
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 5.8e-15 85.5 124 33.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.8e-14 82.8 94 60.6
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 4.9e-14 82.4 117 35.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.5e-12 76.3 80 47.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.1e-10 71.2 88 60.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.3e-10 69.3 69 47.8
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 9.9e-07 58.2 56 48.2


User provided reference genes

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