Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.3e-178 629.8 348 100.0
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 9.4e-142 507.3 348 80.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 6.3e-138 494.6 247 98.8
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 3.4e-123 445.7 326 70.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-122 443.4 343 67.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.4e-116 423.7 350 64.6
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.2e-115 420.6 326 68.4
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.4e-113 413.7 350 64.3
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.8e-113 413.3 329 66.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 2.7e-112 409.5 349 63.0
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 3.5e-112 409.1 347 61.1
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 7.7e-112 407.9 347 61.1
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.7e-112 407.9 350 63.7
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.0e-111 407.5 347 61.4
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.3e-111 407.1 348 61.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 2.3e-111 406.4 361 61.5
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.3e-111 406.4 348 60.9
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.9e-111 406.0 342 62.0
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 2.9e-111 406.0 342 62.0
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 3.8e-111 405.6 346 62.1
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 5.0e-111 405.2 354 63.3
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 6.6e-111 404.8 347 61.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.5e-110 403.7 349 60.5
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 2.5e-110 402.9 348 62.9
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 4.3e-110 402.1 314 66.9
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.2e-109 400.6 329 64.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.0e-108 397.5 342 62.0
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.4e-108 397.1 349 62.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 2.3e-108 396.4 347 61.4
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.3e-106 390.6 343 62.4
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.2e-106 389.8 368 61.4
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.4e-105 387.1 333 58.6
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 4.1e-105 385.6 344 60.8
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.7e-104 382.9 331 62.8
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.6e-104 382.1 326 62.0
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 7.8e-104 381.3 325 61.2
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.0e-103 380.9 352 59.7
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 4.3e-102 375.6 343 59.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.4e-100 370.5 322 62.4
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 8.9e-100 367.9 357 54.1
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.5e-99 367.1 325 61.8
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.5e-99 367.1 351 55.6
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.7e-98 362.5 316 61.4
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 1.4e-97 360.5 343 54.2
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.1e-97 359.0 320 59.1
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 3.5e-96 355.9 347 55.9
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.7e-95 353.6 312 58.0
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.3e-95 353.2 231 71.0
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.6e-95 351.3 352 54.0
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.1e-94 350.9 326 63.5
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 9.5e-94 347.8 347 53.6
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.6e-93 347.1 330 55.5
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 3.6e-93 345.9 350 54.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 3.6e-93 345.9 345 55.4
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 3.6e-93 345.9 335 54.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 8.1e-93 344.7 336 57.4
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.1e-92 344.4 347 53.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.6e-91 339.7 333 52.9
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 9.8e-91 337.8 362 50.6
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.4e-89 333.2 348 54.3
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 5.4e-89 332.0 353 55.2
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 9.2e-89 331.3 355 53.0
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 9.2e-89 331.3 325 54.8
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-88 330.9 269 61.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 3.5e-88 329.3 335 59.4
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 6.0e-88 328.6 351 51.9
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.7e-87 327.0 344 53.2
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.7e-87 327.0 329 56.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 8.6e-87 324.7 344 52.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.5e-86 323.9 356 50.8
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 2.1e-85 320.1 314 58.0
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 8.1e-85 318.2 355 56.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 5.2e-84 315.5 357 55.7
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.0e-83 313.5 393 49.4
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 3.4e-83 312.8 365 47.9
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 9.9e-83 311.2 347 50.1
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.1e-81 307.8 336 47.9
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 4.1e-81 305.8 348 48.3
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 9.2e-81 304.7 350 48.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.6e-80 303.9 343 53.1
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 2.7e-80 303.1 346 46.8
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 6.0e-80 302.0 346 47.1
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 7.8e-80 301.6 336 53.0
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 3.0e-79 299.7 346 46.8
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 3.9e-79 299.3 360 45.8
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 8.6e-79 298.1 348 46.8
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 2.5e-78 296.6 332 53.9
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.3e-78 296.2 350 47.1
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.6e-77 293.9 347 50.7
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.1e-77 293.5 197 70.1
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.8e-77 293.1 325 47.4
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 5.2e-76 288.9 344 46.2
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 6.8e-76 288.5 349 50.1
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 6.8e-76 288.5 398 50.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.8e-75 285.4 348 46.6
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.8e-75 285.4 319 49.5
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 3.8e-74 282.7 325 50.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.0e-71 274.6 232 60.8
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.9e-70 270.4 318 46.9
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 7.3e-70 268.5 292 50.0
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.6e-69 267.3 299 51.8
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.8e-69 266.5 169 74.6
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 4.2e-65 252.7 292 46.6
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-64 250.8 214 58.4
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.7e-64 250.0 214 57.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.6e-61 240.7 347 42.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 4.8e-61 239.2 262 53.4
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 4.0e-60 236.1 331 45.9
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 4.9e-58 229.2 196 54.6
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 8.4e-58 228.4 273 45.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-57 228.0 346 39.3
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 4.2e-57 226.1 248 46.8
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.0e-55 221.5 219 47.9
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 5.6e-54 215.7 327 40.4
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.8e-52 210.7 232 48.7
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.5e-46 190.3 250 47.2
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.8e-45 186.0 126 71.4
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-44 184.5 296 40.9
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 3.1e-44 183.3 260 44.2
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.9e-42 176.8 224 45.5
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 5.5e-41 172.6 222 40.5
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.0e-39 168.3 120 65.8
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.5e-38 164.5 119 64.7
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.5e-33 147.1 119 56.3
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 7.2e-33 145.6 112 61.6
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 4.6e-32 142.9 180 62.8
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.1e-28 130.2 101 56.4
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 9.1e-28 128.6 101 54.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.2e-25 120.2 105 61.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.7e-23 112.5 77 68.8
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 8.8e-23 112.1 89 59.6
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.7e-21 106.7 145 66.9
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.1e-20 105.1 74 62.2
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 8.0e-16 89.0 150 48.0
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 9.7e-14 82.0 147 47.6
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.8e-07 61.2 33 78.8
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 4.0e-07 60.1 33 75.8
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.6e-06 57.4 33 72.7
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.4e-06 57.0 42 61.9
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.8e-06 55.5 43 60.5


User provided reference genes

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