Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 9.5e-101 370.2 184 100.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.1e-96 356.7 184 95.1
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.1e-91 338.6 182 89.6
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.2e-90 336.7 184 86.4
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.4e-90 334.7 184 85.9
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 4.4e-90 334.7 184 86.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.8e-90 334.3 184 87.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 9.8e-90 333.6 184 86.4
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.3e-89 333.2 183 85.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.3e-89 333.2 184 88.0
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.2e-89 332.4 184 84.8
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.2e-89 332.4 184 84.8
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 2.9e-89 332.0 184 86.4
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.9e-89 332.0 184 84.8
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.7e-89 331.6 184 87.5
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-88 330.1 182 85.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.4e-88 328.9 184 87.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.2e-88 328.6 184 83.2
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.1e-88 328.2 184 86.4
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.1e-88 328.2 184 86.4
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.4e-88 327.8 184 84.8
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 7.0e-88 327.4 185 86.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 7.0e-88 327.4 184 86.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 9.2e-88 327.0 183 86.3
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.2e-87 326.6 184 84.8
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 3.5e-87 325.1 182 82.4
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.5e-87 325.1 184 83.2
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.0e-87 324.3 184 83.2
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.0e-87 324.3 184 83.7
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.0e-87 324.3 184 83.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 7.8e-87 323.9 184 85.9
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.0e-86 323.6 184 83.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.0e-86 323.6 184 84.2
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.3e-86 323.2 182 82.4
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-86 322.8 184 84.2
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.3e-86 322.4 184 83.7
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.0e-86 322.0 184 83.7
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.0e-86 322.0 184 83.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-86 321.6 184 82.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 3.9e-86 321.6 184 84.2
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 5.0e-86 321.2 184 84.2
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.0e-86 321.2 184 84.2
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 6.6e-86 320.9 182 83.5
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.6e-86 320.5 184 84.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.9e-85 319.3 184 82.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.9e-85 319.3 184 82.1
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 2.5e-85 318.9 184 83.2
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.5e-85 318.9 184 83.2
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.3e-85 318.5 185 83.2
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 4.3e-85 318.2 186 81.7
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 5.6e-85 317.8 179 86.0
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 7.3e-85 317.4 174 86.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.2e-84 316.6 184 82.1
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 3.6e-84 315.1 183 83.6
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.6e-84 315.1 184 81.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.7e-84 314.7 179 83.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 4.7e-84 314.7 184 81.5
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.0e-84 313.9 184 81.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 8.0e-84 313.9 183 82.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 8.0e-84 313.9 186 82.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.0e-84 313.9 184 79.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.0e-84 313.9 184 79.9
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.1e-83 313.5 184 79.3
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.1e-83 313.5 185 83.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.4e-83 313.2 186 80.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.4e-83 313.2 186 79.6
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-83 312.8 184 79.9
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.8e-83 312.8 186 79.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.3e-83 312.4 184 79.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.1e-83 312.0 184 79.9
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 4.0e-83 311.6 184 80.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.0e-83 311.6 184 78.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 4.0e-83 311.6 185 81.6
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.2e-83 311.2 184 79.9
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 5.2e-83 311.2 184 79.9
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 5.2e-83 311.2 184 79.9
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.2e-83 311.2 184 79.9
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 6.8e-83 310.8 186 80.6
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 8.9e-83 310.5 184 79.9
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-82 310.1 184 79.3
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.2e-82 310.1 184 77.7
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.2e-82 310.1 186 80.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.2e-82 310.1 186 79.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.5e-82 309.7 184 80.4
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.5e-82 309.7 184 78.3
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.5e-82 309.7 185 80.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.0e-82 309.3 184 79.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.0e-82 309.3 186 79.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.0e-82 309.3 184 81.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.6e-82 308.9 184 79.3
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.4e-82 308.5 184 78.3
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 5.8e-82 307.8 184 79.3
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 7.5e-82 307.4 195 76.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 7.5e-82 307.4 184 79.3
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 7.5e-82 307.4 185 80.0
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.3e-81 306.6 186 80.1
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-81 306.2 186 76.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.7e-81 306.2 184 78.3
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.9e-81 305.4 184 79.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 4.9e-81 304.7 184 77.2
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 6.4e-81 304.3 184 78.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.4e-80 303.1 184 79.3
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.2e-80 302.0 184 78.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 4.1e-80 301.6 188 77.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.4e-80 301.2 184 75.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.4e-80 301.2 184 77.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 7.1e-80 300.8 184 77.7
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.2e-79 300.1 184 75.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.7e-79 298.9 184 76.1
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 6.0e-79 297.7 175 80.0
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.1e-77 293.5 177 79.7
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-77 293.5 177 79.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-77 293.1 186 75.3
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.3e-77 291.6 177 78.5
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.3e-77 291.6 177 78.5
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.3e-77 291.6 189 74.6
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-76 290.0 177 77.4
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.6e-76 289.7 175 77.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.6e-76 289.7 183 73.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.7e-76 288.1 228 65.4
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.1e-75 287.0 182 77.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.4e-75 286.6 184 75.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.7e-73 279.6 189 72.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 8.3e-73 277.3 184 75.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 9.2e-72 273.9 159 83.6
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 7.8e-71 270.8 149 86.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.0e-70 270.4 174 73.0
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.5e-69 265.8 147 87.8
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.5e-69 265.8 147 87.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.7e-68 261.5 153 80.4
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-67 259.6 149 83.9
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.6e-66 254.2 149 81.2
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 5.1e-62 241.5 133 88.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 8.7e-62 240.7 183 59.0
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.5e-53 212.6 180 55.6
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.1e-52 207.6 120 84.2
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 7.6e-50 201.1 120 81.7
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 9.9e-50 200.7 175 58.3
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 7.9e-47 191.0 190 55.8
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 7.9e-47 191.0 190 55.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.6e-42 176.0 110 76.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 5.5e-40 168.3 127 67.7
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-39 166.8 150 50.0
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.6e-36 156.8 88 83.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.0e-34 149.8 120 60.8
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.0e-30 136.0 75 86.7
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.5e-26 123.6 63 88.9
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 8.5e-25 117.9 75 73.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 9.4e-24 114.4 174 36.2
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-22 110.2 99 58.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.8e-22 110.2 99 58.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 2.3e-22 109.8 75 74.7
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.0e-22 109.4 168 36.3
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 5.1e-22 108.6 108 58.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.0e-14 84.3 82 58.5
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.0e-14 84.3 94 54.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.4e-11 73.2 234 27.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 5.3e-11 72.0 52 61.5
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-08 64.3 54 61.1
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.9e-08 63.5 38 78.9
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 4.2e-08 62.4 172 28.5
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 2.7e-07 59.7 65 47.7
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.0e-06 55.8 189 27.0


User provided reference genes

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