Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 5.7e-134 481.1 275 100.0
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.5e-73 280.4 291 60.1
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.0e-70 270.0 246 71.1
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 4.3e-57 225.7 224 67.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.4e-53 211.5 284 49.6
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.4e-52 210.7 299 54.5
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 6.7e-50 201.8 281 48.4
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.9e-49 200.3 289 54.3
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 3.3e-49 199.5 276 51.1
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 5.6e-49 198.7 279 50.9
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.3e-48 197.6 275 50.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.2e-48 195.3 266 49.6
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.4e-47 193.4 275 48.7
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 6.9e-47 191.8 275 48.7
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 9.0e-47 191.4 289 51.6
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-46 190.7 275 47.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.0e-46 190.3 283 47.0
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.4e-46 189.5 300 50.3
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.4e-46 189.5 275 50.2
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 7.6e-46 188.3 296 45.3
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.3e-45 187.6 286 47.6
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 3.8e-45 186.0 276 50.7
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 7.1e-44 181.8 268 45.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 2.1e-43 180.3 274 47.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 4.6e-43 179.1 274 46.0
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.0e-42 177.9 306 46.1
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.9e-41 173.7 285 43.5
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.7e-41 172.2 316 44.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.1e-40 170.2 288 44.4
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 2.8e-40 169.9 283 45.6
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 8.2e-40 168.3 287 44.6
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 8.2e-40 168.3 279 43.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 5.3e-39 165.6 288 43.8
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 6.9e-39 165.2 281 43.4
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.0e-39 164.9 287 43.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-38 164.5 287 43.9
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.5e-38 164.1 287 43.9
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.0e-38 163.7 288 45.8
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.0e-38 163.7 269 44.2
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.0e-38 163.7 283 41.7
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.0e-37 161.4 301 41.5
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.3e-37 161.0 299 46.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.3e-37 161.0 338 40.5
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.7e-37 160.6 289 42.2
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 6.5e-37 158.7 276 51.4
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 6.5e-37 158.7 276 44.2
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.4e-37 158.3 281 44.5
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.1e-36 157.9 301 42.9
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.1e-36 157.9 210 51.0
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.5e-36 155.6 328 41.5
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 9.3e-36 154.8 299 44.5
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 9.3e-36 154.8 276 44.9
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-35 154.5 318 38.7
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.5e-35 152.9 270 45.9
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.5e-35 152.9 277 46.2
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 7.9e-35 151.8 184 52.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.3e-34 151.0 270 44.4
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 3.9e-34 149.4 288 43.4
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 8.7e-34 148.3 292 48.3
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.1e-33 147.9 292 46.2
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 3.3e-33 146.4 294 47.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 4.3e-33 146.0 168 51.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 7.4e-33 145.2 286 46.5
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 7.4e-33 145.2 305 42.6
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 9.7e-33 144.8 297 44.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.3e-32 144.4 270 41.1
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.6e-32 144.1 276 44.9
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 2.8e-32 143.3 280 42.5
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 8.2e-32 141.7 161 59.6
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.1e-31 141.4 280 40.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.8e-31 140.6 280 40.4
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.4e-31 140.2 281 39.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.1e-31 139.8 280 40.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 6.9e-31 138.7 296 42.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 6.9e-31 138.7 284 41.2
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.5e-30 137.5 280 38.6
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.5e-30 137.5 280 40.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-30 137.5 334 38.9
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.6e-30 136.7 273 40.7
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.6e-30 136.7 287 44.9
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.4e-30 136.3 135 54.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 4.5e-30 136.0 175 47.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 5.9e-30 135.6 280 46.8
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 7.7e-30 135.2 190 47.4
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 7.7e-30 135.2 285 38.6
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-29 134.4 287 44.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.7e-29 134.0 165 49.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 2.9e-29 133.3 254 40.6
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 3.8e-29 132.9 284 39.1
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 6.5e-29 132.1 232 50.4
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.4e-28 131.0 303 43.2
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 5.5e-28 129.0 300 38.0
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 5.5e-28 129.0 233 42.5
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.1e-27 127.1 273 41.0
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.7e-27 126.7 94 70.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 4.6e-27 125.9 300 39.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.3e-26 123.6 284 37.0
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.0e-26 123.2 273 37.7
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 6.7e-26 122.1 322 40.1
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 6.7e-26 122.1 291 34.4
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.7e-25 119.0 167 56.9
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.2e-24 115.2 178 46.1
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.1e-23 112.8 149 61.7
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.5e-22 110.9 212 38.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.9e-21 106.7 273 37.0
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.4e-20 104.4 55 83.6
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.9e-20 104.0 274 35.8
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.5e-20 102.4 50 90.0
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 7.2e-20 102.1 291 36.1
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.4e-20 101.7 130 43.8
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.6e-19 100.9 47 93.6
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.6e-19 100.9 84 60.7
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 6.1e-19 99.0 95 56.8
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.0e-18 98.2 272 34.9
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.4e-18 97.8 61 75.4
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.8e-18 97.4 62 72.6
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.0e-18 96.7 272 39.3
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.9e-18 96.3 58 72.4
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.7e-18 95.5 177 37.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 8.8e-18 95.1 62 71.0
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 8.8e-18 95.1 62 71.0
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 8.8e-18 95.1 46 89.1
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-17 94.7 58 70.7
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.1e-17 94.7 58 70.7
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.1e-17 94.7 58 70.7
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-17 94.4 59 71.2
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.0e-17 94.0 50 80.0
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 2.6e-17 93.6 183 42.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 4.4e-17 92.8 63 73.0
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 5.7e-17 92.4 57 75.4
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 7.4e-17 92.0 57 70.2
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 7.4e-17 92.0 41 97.6
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 9.7e-17 91.7 188 37.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.7e-17 91.7 65 63.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.8e-16 90.1 50 80.0
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.8e-16 89.4 52 75.0
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 4.8e-16 89.4 57 68.4
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.1e-15 88.2 134 44.0
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.8e-15 87.4 59 67.8
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.8e-15 87.4 59 67.8
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 4.1e-15 86.3 44 84.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 4.1e-15 86.3 44 84.1
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 4.1e-15 86.3 44 84.1
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 4.1e-15 86.3 44 84.1
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 5.3e-15 85.9 273 33.0
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 5.3e-15 85.9 50 80.0
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.0e-15 85.5 43 83.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 9.1e-15 85.1 41 87.8
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-14 84.7 40 90.0
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-14 84.0 54 72.2
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-14 84.0 54 72.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-14 84.0 54 72.2
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-14 84.0 54 72.2
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.0e-14 84.0 54 72.2
Lju124A25G29 Lonicera japonica HOM05D003648 ORTHO05D004267 2.2e-13 80.5 139 46.0
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 2.9e-13 80.1 63 58.7
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 8.5e-13 78.6 274 29.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.1e-12 78.2 35 97.1
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.9e-12 77.4 49 67.3
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.0e-10 71.6 50 62.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 39 74.4
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 53 60.4
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 4.0e-10 69.7 143 34.3
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.5e-09 67.8 39 71.8
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 5.7e-09 65.9 81 45.7
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.3e-08 64.7 37 70.3
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 1.7e-08 64.3 129 31.8
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 8.2e-08 62.0 120 37.5
Actinidia32399 Actinidia chinensis HOM05D003648 ORTHO05D038141 1.1e-07 61.6 126 40.5
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 1.4e-07 61.2 287 26.5
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 5.3e-07 59.3 43 53.5
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 7.0e-07 58.9 37 62.2
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 2.0e-06 57.4 165 30.3


User provided reference genes

Program Settings