Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 6.7e-114 414.1 215 100.0
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 93.1
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 93.1
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 93.1
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.7
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.7
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 91.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.3
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 91.2
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 6.9e-103 377.5 216 90.3
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 9.0e-103 377.1 216 91.2
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.5e-102 376.3 216 90.7
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.8
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.4e-102 375.2 216 90.3
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 89.4
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 89.8
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 89.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 90.7
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 90.3
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 89.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 89.8
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 89.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.9
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 89.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 89.4
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 89.4
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 214 90.2
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.2e-101 372.5 215 88.8
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 89.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 89.4
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 89.4
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 88.4
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 89.8
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.9
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 3.8e-101 371.7 215 89.3
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 89.8
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 89.4
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.4
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.9
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.9
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.9
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.4e-100 369.8 216 88.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 87.0
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 88.9
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 88.0
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.0
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.0
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 88.0
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 86.6
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 88.4
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 87.5
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 88.0
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 87.0
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.6e-99 365.2 215 87.0
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 220 87.7
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 88.9
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 4.6e-99 364.8 216 86.1
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 4.6e-99 364.8 216 87.0
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 87.5
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 86.6
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 7.9e-99 364.0 215 87.0
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.1
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 87.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 85.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 85.2
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 87.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 87.0
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 84.7
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 84.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 86.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.2
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 5.1e-98 361.3 216 87.5
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 84.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 84.3
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 84.3
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 85.2
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 87.5
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 84.3
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 87.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 8.8e-98 360.5 221 85.5
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 83.8
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 83.8
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.5e-97 359.8 227 85.0
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 83.8
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 83.8
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 84.3
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-97 359.0 216 84.3
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.5e-97 359.0 216 86.6
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.3e-97 358.2 216 86.6
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 86.1
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 83.8
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-96 356.3 216 84.7
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.8e-96 355.5 216 83.8
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.8e-96 355.5 216 86.6
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 4.8e-96 354.8 216 84.7
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 85.2
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 1.1e-95 353.6 216 85.2
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.1e-95 352.1 216 84.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.3e-95 351.3 217 84.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.0e-93 344.7 216 86.1
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 2.5e-92 342.4 221 81.0
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 85.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 4.2e-92 341.7 199 90.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 77.8
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 79.2
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.7e-90 334.3 216 82.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.8e-88 328.9 221 78.7
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 3.1e-87 325.5 218 78.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 80.1
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 80.1
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 5.3e-87 324.7 216 80.1
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 81.5
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.2e-86 323.6 181 89.0
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 7.7e-86 320.9 216 78.2
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.7e-85 319.7 215 74.9
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.7e-85 319.7 216 75.9
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 5.0e-85 318.2 215 80.0
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 6.5e-85 317.8 215 74.4
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.2e-84 314.3 216 75.0
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 1.6e-83 313.2 165 94.5
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.4e-82 310.1 216 71.8
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.1e-81 307.0 165 90.9
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 2.0e-81 306.2 165 90.9
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 3.5e-78 295.4 216 74.1
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.2e-77 292.7 276 60.9
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 5.0e-77 291.6 216 74.1
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 3.6e-75 285.4 216 73.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.4e-74 283.5 216 72.7
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-74 283.1 216 69.4
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.3e-74 282.7 216 72.2
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.8e-72 275.8 216 71.8
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.1e-71 273.9 217 67.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.1e-71 272.3 217 68.7
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.2e-70 270.4 203 73.9
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.5e-70 268.9 180 83.9
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 9.4e-68 260.8 165 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.7e-67 259.2 147 81.6
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.8e-66 256.5 353 47.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 9.8e-65 250.8 217 66.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 2.2e-56 223.0 219 56.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.7e-54 216.1 233 52.8
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 8.0e-51 204.5 108 86.1
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 8.0e-51 204.5 108 86.1
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.4e-50 203.8 273 52.7
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.3e-45 187.2 136 77.2
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 5.6e-44 181.8 177 56.5
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 6.2e-43 178.3 215 47.4
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.4e-40 168.3 135 69.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.6e-38 163.7 114 78.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.1e-38 163.3 106 75.5
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 7.8e-38 161.4 81 92.6
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-36 157.5 84 85.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 2.8e-35 152.9 223 46.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.8e-35 152.9 81 86.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.9e-31 140.2 101 78.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.9e-31 140.2 101 78.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.9e-31 140.2 101 78.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.9e-31 140.2 101 78.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.9e-31 140.2 101 78.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.1e-26 124.4 71 77.5
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.5e-20 104.0 63 85.7
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-18 97.1 74 75.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.2e-17 94.4 68 79.4
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 1.6e-11 73.9 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 6.2e-11 72.0 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 1.3e-08 64.3 48 68.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 1.3e-08 64.3 48 68.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 1.3e-08 64.3 48 68.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 4.9e-08 62.4 48 66.7


User provided reference genes

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