Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4959.4 2527 100.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4467.1 2532 90.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 4162.8 2541 84.1
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 4083.5 2531 82.5
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3985.3 2575 79.5
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3930.6 2543 78.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3923.6 2534 79.4
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3883.2 2545 77.8
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3880.1 2536 78.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3859.7 2541 77.9
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3859.7 2541 78.0
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3853.1 2537 77.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3852.8 2535 77.6
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3849.3 2549 77.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3842.4 2865 71.5
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3831.2 2544 77.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3826.9 2562 76.6
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3813.8 2537 76.9
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3801.9 2539 77.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3798.8 2571 76.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3790.7 2557 76.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3748.4 2547 75.5
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3712.9 2550 74.5
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3698.7 2531 74.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3673.6 2531 74.6
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3664.8 2541 74.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3661.3 2606 73.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3654.0 2539 73.5
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3627.8 2540 73.8
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3624.7 2551 73.3
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3622.4 2531 72.9
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3620.5 2538 73.4
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3608.9 2531 72.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3602.4 2533 73.3
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3600.1 2525 72.8
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3581.2 2536 73.1
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3563.1 2543 72.5
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3558.1 2547 72.7
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3552.7 2356 77.7
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3531.5 2557 72.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3526.5 2557 72.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3524.2 2541 72.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3510.7 2538 71.7
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3508.4 2589 71.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3491.4 2561 71.5
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3481.8 2547 70.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3463.3 2543 70.0
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3454.8 2550 70.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3417.1 2248 77.5
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3391.7 2535 69.5
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3389.0 2409 73.4
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3307.7 2542 68.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3301.1 2544 67.8
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3297.7 2542 67.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3290.4 2543 67.7
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3274.6 2545 67.0
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3264.9 2549 67.4
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3250.7 2540 67.2
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3249.1 2086 79.3
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3238.7 2543 67.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 3219.9 2614 67.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3209.1 2543 66.4
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3205.6 2542 66.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3202.9 2542 66.3
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3193.3 2575 65.7
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3184.0 2575 65.5
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 3173.3 1871 86.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3126.3 2565 64.5
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 3077.7 2234 71.1
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 3029.6 1887 81.8
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2889.0 2035 72.5
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2760.3 1732 80.5
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2710.6 1642 83.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2563.1 1830 71.8
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2463.0 2306 58.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2437.1 1775 72.3
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2424.4 1735 72.1
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2421.4 1724 73.5
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2192.5 2696 48.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2156.7 1694 66.6
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2124.0 2779 45.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 2040.0 1187 86.1
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1968.7 1177 85.7
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1787.7 1145 80.3
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1765.4 1490 63.2
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1751.1 1098 82.5
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1746.1 1420 65.8
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1712.2 2550 42.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1674.8 1161 76.5
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1655.6 1143 76.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1587.0 1480 58.6
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1540.8 1617 53.4
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1523.8 2369 40.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1458.0 2683 36.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1456.0 1190 65.0
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1449.9 853 85.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1392.5 1174 64.1
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1293.5 744 87.5
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1257.3 900 70.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1185.6 1028 63.7
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1102.8 672 84.2
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 9.1e-303 1045.0 1121 51.9
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 8.5e-301 1038.5 609 87.8
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.1e-275 954.1 910 58.5
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-274 951.4 633 75.8
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 7.3e-260 902.5 1047 50.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.3e-253 881.7 904 54.6
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 2.0e-225 788.1 730 60.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.8e-224 783.9 660 61.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.4e-217 760.8 658 60.6
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.4e-215 755.4 496 76.4
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.9e-210 736.5 843 53.7
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 7.9e-198 696.4 489 70.8
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 7.4e-196 689.9 858 47.0
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 3.6e-190 671.0 677 54.7
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.0e-184 650.6 549 63.6
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-183 649.4 385 83.4
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.4e-183 649.0 613 61.8
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.2e-177 629.4 491 65.8
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.3e-173 615.1 501 68.1
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 6.4e-147 527.3 481 59.3
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.9e-130 472.6 513 49.1
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.3e-115 423.3 264 77.3
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.2e-114 418.7 239 90.4
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 8.4e-99 367.5 204 94.1
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.4e-98 366.7 347 55.3
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.1e-98 364.4 229 78.2
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.5e-95 355.9 180 95.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 6.1e-89 334.7 219 77.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 1.5e-87 330.1 266 66.2
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 9.7e-87 327.4 180 86.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.3e-78 298.1 315 54.0
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.7e-75 290.0 151 94.7
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 5.0e-75 288.5 303 51.2
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 7.2e-74 284.6 158 85.4
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.5e-71 276.9 305 52.1
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.2e-70 273.1 287 54.7
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 3.7e-70 272.3 301 53.2
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.1e-57 228.4 338 42.6
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.0e-56 226.1 306 45.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.3e-54 220.7 1975 22.7
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.0e-48 199.5 257 45.1
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.5e-39 170.6 116 75.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.7e-38 166.0 143 61.5
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.9e-38 165.6 116 79.3
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.4e-37 164.1 105 79.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.6e-33 149.4 139 57.6
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 5.2e-32 145.6 141 52.5
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 2.0e-31 143.7 121 62.0
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.5e-28 132.9 101 76.2
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.5e-28 132.9 101 76.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 2.5e-26 126.7 120 59.2
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 6.2e-25 122.1 108 63.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.2e-21 109.8 131 56.5
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.0e-19 104.8 153 42.5
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 3.0e-19 103.2 79 69.6
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.1e-17 97.1 123 56.1
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 2.3e-16 93.6 76 60.5
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.9e-16 91.7 115 53.0
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.6e-15 90.1 73 69.9
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 4.4e-15 89.4 61 72.1
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 5.8e-15 89.0 81 55.6
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-14 87.8 58 70.7
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.7e-14 87.4 88 52.3
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.7e-14 86.3 47 87.2
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.4e-13 84.3 67 65.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.4e-13 84.3 67 65.7
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 2.7e-12 80.1 51 76.5
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 4.6e-12 79.3 104 46.2
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.0e-11 78.2 48 81.2
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.7e-11 77.4 257 31.5
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.9e-10 73.9 79 60.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.1e-08 66.6 105 45.7
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.0e-08 66.2 61 57.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.2e-08 65.9 70 52.9
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 5.8e-07 62.4 82 46.3
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 2.9e-06 60.1 138 34.8


User provided reference genes

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