Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 0.0e+00 1209.9 622 100.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-263 912.9 634 76.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.7e-258 896.0 629 75.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.9e-258 895.2 628 75.0
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.9e-258 895.2 639 75.1
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.3e-255 886.3 616 75.6
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.5e-246 855.5 676 68.2
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.4e-241 837.8 668 69.8
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 9.2e-241 837.0 628 71.3
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.3e-239 833.2 631 69.1
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.9e-239 831.6 630 70.6
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.9e-238 829.3 632 70.4
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.9e-238 829.3 634 70.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.6e-237 826.2 628 69.7
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 6.4e-234 814.3 630 68.6
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.6e-232 809.7 627 69.1
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.3e-231 805.8 628 67.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.3e-229 800.0 619 68.3
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.3e-229 800.0 625 69.6
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.8e-229 798.9 627 68.4
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.6e-229 798.5 628 67.2
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.8e-229 798.1 624 68.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 5.3e-228 794.7 590 70.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.2e-227 793.5 618 66.8
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 9.9e-227 790.4 625 66.2
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.4e-225 786.6 623 67.6
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.4e-225 786.6 628 66.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.9e-225 786.2 628 66.6
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.4e-225 785.8 624 67.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 5.1e-223 778.1 620 65.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 4.3e-222 775.0 591 68.7
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.6e-221 773.1 601 67.1
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 2.4e-220 769.2 659 64.2
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.4e-220 769.2 616 66.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.6e-219 764.2 626 65.2
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.9e-218 762.3 637 66.9
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 4.9e-218 761.5 590 67.8
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 6.4e-218 761.1 596 65.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 7.9e-216 754.2 628 64.0
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.3e-215 752.7 627 63.6
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.3e-215 752.7 586 67.1
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 8.7e-215 750.7 601 65.2
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.5e-214 750.0 590 68.0
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.6e-213 746.5 618 64.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.0e-212 741.9 630 64.6
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.3e-212 741.5 610 66.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.5e-211 740.0 627 64.3
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.0e-211 739.6 618 62.3
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 7.6e-211 737.6 620 65.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.0e-210 737.3 616 65.9
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.0e-210 737.3 624 64.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.9e-210 734.9 616 63.8
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.5e-209 732.6 635 63.3
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.6e-208 729.9 633 65.4
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 4.3e-206 721.8 601 62.9
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 2.1e-205 719.5 630 62.9
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.8e-205 719.2 589 64.2
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.4e-204 716.8 583 65.7
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.9e-204 714.5 633 61.3
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-203 713.8 597 63.1
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 4.5e-203 711.8 594 62.1
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.9e-202 709.1 600 62.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.4e-201 706.8 588 62.2
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.4e-201 706.8 597 64.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.9e-201 706.4 626 62.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.5e-201 706.1 597 64.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-201 705.7 605 60.5
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 3.2e-201 705.7 607 63.6
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-200 703.7 613 61.2
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.2e-200 703.7 613 61.2
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.1e-200 703.0 580 63.1
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.7e-200 702.6 606 61.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 6.1e-200 701.4 588 64.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.8e-199 699.9 632 59.7
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 5.1e-199 698.4 576 65.1
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 4.3e-198 695.3 596 60.7
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 9.7e-198 694.1 584 61.8
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.2e-197 693.0 599 61.6
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.8e-197 692.6 621 61.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 8.2e-197 691.0 580 63.6
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.1e-196 690.6 611 61.7
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-196 690.3 603 60.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.1e-196 688.7 614 60.7
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.2e-195 687.2 600 59.7
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.5e-195 686.8 636 59.4
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-195 686.4 601 60.1
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.4e-193 680.2 587 61.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.5e-193 679.5 632 59.3
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-190 670.6 641 58.5
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.1e-190 670.6 582 63.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.0e-186 657.5 624 61.4
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 2.9e-186 656.0 634 55.7
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 5.0e-186 655.2 634 57.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 4.2e-185 652.1 633 58.3
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 9.4e-185 651.0 620 58.5
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.7e-184 649.4 596 59.1
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 7.4e-182 641.3 614 59.1
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.3e-174 615.9 515 64.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 6.3e-173 611.7 597 57.1
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.4e-172 610.5 502 65.3
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 9.1e-172 607.8 619 52.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.3e-170 604.0 631 54.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.2e-168 597.4 581 54.0
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 5.2e-167 592.0 587 55.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 4.1e-164 582.4 556 57.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 9.5e-161 571.2 625 54.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.8e-160 569.7 586 55.1
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.3e-157 558.1 470 66.6
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-148 529.6 470 61.9
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.3e-133 481.1 591 47.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 5.1e-130 469.2 582 48.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 9.2e-124 448.4 617 43.6
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.6e-120 437.6 595 43.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.6e-118 430.3 383 62.4
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 8.7e-114 415.2 484 50.8
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 5.6e-97 359.4 553 40.9
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 9.6e-97 358.6 367 56.9
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.8e-90 337.8 267 66.7
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 3.9e-82 310.1 357 51.0
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 2.2e-80 304.3 364 50.3
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.6e-75 288.1 235 67.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.3e-74 284.3 381 44.9
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.0e-73 281.2 282 55.3
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.7e-67 260.8 204 64.7
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.6e-67 260.4 247 55.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.5e-65 255.0 212 62.3
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.2e-62 245.4 299 45.2
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.9e-61 240.7 315 42.2
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.7e-53 214.9 152 75.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.2e-53 214.5 119 88.2
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.8e-50 202.6 121 83.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.6e-49 201.1 154 67.5
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.9e-46 189.9 191 48.2
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.9e-44 184.9 227 41.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.7e-40 170.6 225 45.8
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 5.4e-39 166.8 131 71.0
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.2e-39 166.0 184 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.6e-38 165.2 159 55.3
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.5e-38 164.1 139 62.6
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.3e-37 161.4 512 27.7
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.5e-36 157.9 102 74.5
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.3e-36 157.1 113 78.8
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.1e-34 151.0 134 59.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 5.2e-34 150.2 141 56.7
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-33 148.7 217 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.7e-30 137.9 289 32.5
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.6e-27 128.6 124 62.9
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-26 125.9 175 43.4
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 3.1e-26 124.4 87 72.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 6.8e-26 123.2 87 72.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.6e-25 121.3 65 87.7
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 6.4e-24 116.7 159 44.7
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 4.1e-23 114.0 101 56.4
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 8.6e-21 106.3 74 74.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-20 105.1 70 71.4
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-20 104.8 76 69.7
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 5.6e-20 103.6 86 66.3
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 7.3e-20 103.2 72 66.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 5.8e-17 93.6 79 62.0
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.3e-16 92.4 178 34.3
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.9e-15 88.6 147 44.9
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.1e-12 79.3 140 35.0
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 3.1e-10 71.2 49 67.3
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.0e-09 68.6 48 66.7
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 1.3e-08 65.9 48 64.6


User provided reference genes

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