Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.5e-280 967.2 478 100.0
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 1.2e-235 819.7 478 84.7
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.2e-225 784.6 476 80.7
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.7e-216 755.4 474 77.8
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 3.3e-214 748.4 479 78.1
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.6e-213 746.1 474 76.6
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.6e-213 746.1 476 76.7
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.8e-213 745.3 474 76.6
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 3.7e-213 745.0 474 77.2
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 4.8e-213 744.6 484 76.7
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 6.3e-213 744.2 474 76.6
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 8.2e-213 743.8 468 77.6
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.1e-212 743.4 474 76.6
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.1e-212 741.9 474 77.2
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 9.0e-212 740.3 474 77.2
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 2.0e-211 739.2 474 75.9
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 4.5e-211 738.0 474 76.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 7.7e-211 737.3 474 74.7
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.7e-211 737.3 474 75.1
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.0e-210 736.9 474 75.9
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 8.5e-210 733.8 474 75.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 2.5e-209 732.3 474 74.9
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.2e-209 730.7 474 74.1
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.2e-209 730.7 476 75.0
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.2e-208 729.9 475 74.5
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.7e-208 728.8 474 74.9
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.7e-208 728.8 475 74.7
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.6e-208 728.0 474 77.4
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.8e-207 726.1 476 74.2
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 3.9e-207 724.9 471 75.2
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 3.3e-206 721.8 474 74.5
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 3.7e-205 718.4 474 75.3
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.3e-205 717.6 472 74.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 8.2e-205 717.2 474 74.5
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 4.5e-203 711.4 474 73.2
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.1e-201 706.8 474 74.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.1e-201 706.8 469 73.8
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.1e-200 702.6 469 73.1
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.4e-199 699.9 479 73.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.8e-199 699.5 469 72.7
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 5.1e-199 698.0 474 73.4
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.1e-198 696.8 476 72.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 2.6e-198 695.7 474 71.1
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 3.3e-198 695.3 468 73.7
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.3e-197 693.3 498 72.3
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.7e-197 693.0 466 72.1
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.7e-197 693.0 474 70.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.8e-197 691.4 480 72.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.8e-196 689.5 474 71.7
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.0e-195 686.0 474 70.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 5.9e-195 684.5 469 71.9
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.9e-194 682.2 474 70.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 3.8e-194 681.8 475 70.5
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 9.4e-193 677.2 453 75.5
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.2e-192 676.8 474 70.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.7e-192 674.9 478 69.0
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.1e-190 670.2 476 71.6
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.3e-190 668.7 465 71.8
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 4.4e-190 668.3 475 69.1
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 9.7e-190 667.2 495 66.7
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.8e-189 664.8 479 69.5
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.1e-188 662.1 434 73.7
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 9.1e-188 660.6 469 70.6
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 3.5e-187 658.7 449 74.4
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.2e-185 652.1 465 70.5
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.7e-184 649.0 474 67.7
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.0e-183 645.6 484 66.5
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 8.8e-183 644.0 475 66.7
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.5e-182 643.3 475 67.4
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.9e-178 629.0 420 74.8
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.8e-178 628.6 420 74.5
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 3.6e-176 622.1 455 70.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 6.8e-175 617.8 497 65.4
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.5e-174 614.4 686 52.0
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.7e-173 613.2 393 74.3
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.1e-172 610.5 474 66.0
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 3.1e-172 609.0 471 64.8
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.2e-171 607.1 476 66.8
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.9e-170 602.4 377 75.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.0e-167 592.4 444 66.4
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.1e-164 583.9 480 63.5
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 3.9e-162 575.5 416 67.5
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 6.4e-157 558.1 382 73.3
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 2.0e-155 553.1 383 72.3
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 4.0e-151 538.9 473 60.9
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.8e-144 516.2 480 55.8
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 9.9e-142 507.7 462 53.9
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 4.9e-141 505.4 545 53.8
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 2.1e-139 500.0 458 58.3
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 7.8e-139 498.0 422 62.3
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.8e-134 481.9 372 67.5
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 5.8e-134 481.9 318 77.0
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 7.6e-134 481.5 415 63.4
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.8e-133 479.2 474 53.4
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 6.4e-133 478.4 467 55.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 8.4e-133 478.0 477 54.1
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.7e-130 470.3 476 55.9
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.6e-129 465.3 474 52.3
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.4e-127 460.7 313 74.4
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.3e-125 454.1 312 73.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 7.1e-124 448.4 318 71.1
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.2e-123 447.6 396 54.5
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.3e-122 444.1 318 69.5
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.6e-120 437.2 479 52.0
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 8.4e-117 424.9 474 51.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 5.1e-114 415.6 474 52.3
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.7e-112 409.5 319 65.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.1e-108 397.9 481 42.8
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 3.2e-108 396.4 440 51.8
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.2e-107 394.4 474 48.5
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.2e-101 373.6 320 58.8
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 7.2e-100 368.6 453 48.8
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.7e-98 362.1 246 74.0
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 7.4e-97 358.6 246 73.2
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.1e-81 308.1 372 44.4
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-71 275.0 205 70.7
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-71 275.0 205 70.7
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.5e-70 269.6 196 71.4
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 4.7e-67 259.6 187 67.9
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.0e-66 256.9 152 75.7
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.0e-66 256.5 185 69.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 9.2e-55 218.8 123 82.1
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.0e-53 215.3 126 77.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.2e-51 208.4 126 77.0
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 4.7e-51 206.5 126 74.6
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.2e-48 197.6 127 75.6
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.4e-47 194.1 123 69.9
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.0e-42 178.7 174 57.5
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 5.4e-39 166.4 322 32.3
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.5e-38 163.7 128 66.4
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 5.0e-37 159.8 105 77.1
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.6e-35 153.7 101 70.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 6.2e-35 152.9 112 67.0
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.2e-30 138.7 79 79.7
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 3.0e-29 134.0 108 59.3
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 2.6e-17 94.4 66 74.2
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.4e-17 93.6 63 76.2
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.4e-17 93.6 69 73.9
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 7.6e-17 92.8 64 67.2
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.4e-15 87.8 45 86.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 3.0e-13 80.9 48 70.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 1.1e-10 72.4 31 93.5
Eucgr.L00581 Eucalyptus grandis HOM05D005203 ORTHO05D192196 7.9e-06 56.2 43 62.8


User provided reference genes

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