Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14112 Davidia involucrata HOM05D000003 ORTHO05D000007 2.2e-66 255.4 118 100.0
Prupe.4G246900 Prunus persica HOM05D000003 ORTHO05D000007 4.3e-14 81.6 117 35.0
THA.LOC104799464 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 9.6e-14 80.5 144 31.9
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-13 80.1 125 36.8
Lj3g0003480 Lotus japonicus HOM05D000003 ORTHO05D000007 1.6e-13 79.7 145 29.0
Dinv30689 Davidia involucrata HOM05D000003 ORTHO05D000007 3.7e-13 78.6 138 28.3
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 8.1e-13 77.4 125 36.0
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 1.4e-12 76.6 127 33.1
TPR.G511 Trifolium pratense HOM05D000003 ORTHO05D000007 1.8e-12 76.3 126 33.3
QL02p068766 Quercus lobata HOM05D000003 ORTHO05D000007 5.3e-12 74.7 141 27.0
EL10Ac3g06843 Beta vulgaris HOM05D000003 ORTHO05D000007 6.9e-12 74.3 133 28.6
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.9e-12 74.3 143 32.2
AUR62042607 Chenopodium quinoa HOM05D002059 ORTHO05D000007 6.9e-12 74.3 126 31.7
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 9.0e-12 73.9 126 31.7
TWI56G1353 Tripterygium wilfordii HOM05D000003 ORTHO05D000007 9.0e-12 73.9 151 31.8
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-11 73.6 133 29.3
Rhsim09G0202100 Rhododendron simsii HOM05D000003 ORTHO05D000007 1.2e-11 73.6 131 32.1
Sabra02G0002600 Salix brachista HOM05D000003 ORTHO05D000007 1.2e-11 73.6 121 31.4
TPR.G32099 Trifolium pratense HOM05D000003 ORTHO05D000007 1.2e-11 73.6 128 31.2
AUR62034456 Chenopodium quinoa HOM05D000091 ORTHO05D001510 2.0e-11 72.8 125 32.0
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 2.0e-11 72.8 125 32.8
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 2.6e-11 72.4 125 32.0
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.4e-11 72.0 143 31.5
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 4.5e-11 71.6 124 31.5
Dinv07064 Davidia involucrata HOM05D000003 ORTHO05D000007 4.5e-11 71.6 121 30.6
QL02p080468 Quercus lobata HOM05D000003 ORTHO05D000007 4.5e-11 71.6 139 28.8
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-11 71.2 127 28.3
EL10Ac2g03868 Beta vulgaris HOM05D000003 ORTHO05D000007 5.8e-11 71.2 132 28.0
EL10Ac4g10100 Beta vulgaris HOM05D000003 ORTHO05D000007 5.8e-11 71.2 132 28.0
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-11 71.2 125 33.6
Lj2g0002638 Lotus japonicus HOM05D000003 ORTHO05D000007 7.6e-11 70.9 141 28.4
PSO017G5897 Papaver somniferum HOM05D000003 ORTHO05D000007 7.6e-11 70.9 125 29.6
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 9.9e-11 70.5 144 27.8
Lj2g0006651 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-10 70.1 137 29.2
Atru.chr11.84 Acer truncatum HOM05D000003 ORTHO05D000007 1.7e-10 69.7 127 29.9
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 2.2e-10 69.3 124 31.5
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-10 69.3 137 27.7
Lj1g0012109 Lotus japonicus HOM05D000003 ORTHO05D000007 2.2e-10 69.3 136 27.9
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-10 68.9 127 31.5
Atru.chr4.106 Acer truncatum HOM05D000003 ORTHO05D000007 2.9e-10 68.9 124 29.0
Gorai.010G180600 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.9e-10 68.9 124 33.9
Lj6g0003171 Lotus japonicus HOM05D000003 ORTHO05D000007 2.9e-10 68.9 132 28.0
QL08p054104 Quercus lobata HOM05D000003 ORTHO05D000007 2.9e-10 68.9 136 26.5
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 3.8e-10 68.6 125 30.4
Lj6g0020901 Lotus japonicus HOM05D000003 ORTHO05D000007 4.9e-10 68.2 132 28.8
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.9e-10 68.2 122 31.1
Gorai.005G048700 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.4e-10 67.8 98 33.7
PGR004G0997 Punica granatum HOM05D000003 ORTHO05D000007 6.4e-10 67.8 133 30.1
Atru.chr7.255 Acer truncatum HOM05D000003 ORTHO05D000007 8.4e-10 67.4 127 30.7
Lj3g0003086 Lotus japonicus HOM05D000003 ORTHO05D000006 8.4e-10 67.4 121 29.8
Lj4g0008475 Lotus japonicus HOM05D000003 ORTHO05D000007 8.4e-10 67.4 134 26.9
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 1.1e-09 67.0 134 28.4
Hma1.2p1_0773F.1_g216200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 1.4e-09 66.6 126 31.7
QL04p067563 Quercus lobata HOM05D000003 ORTHO05D000007 1.9e-09 66.2 133 27.8
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 2.4e-09 65.9 147 25.2
COL.COLO4_28420 Corchorus olitorius HOM05D016024 ORTHO05D000007 2.4e-09 65.9 124 29.0
Gorai.009G311100 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.4e-09 65.9 142 31.7
PSO541G5827 Papaver somniferum HOM05D000003 ORTHO05D000007 2.4e-09 65.9 133 27.8
TPR.G18895 Trifolium pratense HOM05D000003 ORTHO05D000007 2.4e-09 65.9 140 27.1
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 3.2e-09 65.5 142 26.1
Gorai.009G414700 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.2e-09 65.5 110 33.6
Lj1g0011911 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-09 65.5 144 25.7
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 4.2e-09 65.1 132 28.0
PSO832G0039 Papaver somniferum HOM05D000003 ORTHO05D000007 4.2e-09 65.1 144 25.7
Rhsim10G0082700 Rhododendron simsii HOM05D000003 ORTHO05D000007 4.2e-09 65.1 132 30.3
Rhsim10G0082900 Rhododendron simsii HOM05D000003 ORTHO05D000007 4.2e-09 65.1 132 30.3
arahy.Tifrunner.gnm1.ann1.KQZX4E Arachis hypogaea HOM05D000003 ORTHO05D000007 5.5e-09 64.7 102 34.3
Lj5g0003428 Lotus japonicus HOM05D000003 ORTHO05D000007 5.5e-09 64.7 139 26.6
COL.COLO4_04181 Corchorus olitorius HOM05D019489 ORTHO05D000007 7.1e-09 64.3 89 36.0
COL.COLO4_28682 Corchorus olitorius HOM05D000003 ORTHO05D000007 7.1e-09 64.3 124 27.4
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 7.1e-09 64.3 132 28.0
TPR.G34138 Trifolium pratense HOM05D000003 ORTHO05D000007 7.1e-09 64.3 133 27.8
Gorai.010G075700 Gossypium raimondii HOM05D000003 ORTHO05D000007 9.3e-09 63.9 93 36.6
Lj1g0004894 Lotus japonicus HOM05D000003 ORTHO05D000007 9.3e-09 63.9 139 28.1
QL09p023087 Quercus lobata HOM05D000003 ORTHO05D000007 9.3e-09 63.9 137 27.0
COL.COLO4_23636 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.2e-08 63.5 138 26.1
Gorai.004G096300 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.2e-08 63.5 93 36.6
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 1.2e-08 63.5 126 27.0
QL10p063003 Quercus lobata HOM05D000003 ORTHO05D000007 1.2e-08 63.5 134 25.4
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 1.2e-08 63.5 127 26.0
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.6e-08 63.2 121 29.8
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 1.6e-08 63.2 127 25.2
AUR62013447 Chenopodium quinoa HOM05D000003 ORTHO05D000007 2.1e-08 62.8 98 33.7
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 2.1e-08 62.8 140 27.9
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 2.1e-08 62.8 140 27.9
Prupe.1G231200 Prunus persica HOM05D000003 ORTHO05D000007 2.1e-08 62.8 125 30.4
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 2.1e-08 62.8 136 25.0
Lj2g0021734 Lotus japonicus HOM05D000003 ORTHO05D000006 2.7e-08 62.4 147 25.9
QL04p092100 Quercus lobata HOM05D000003 ORTHO05D000007 2.7e-08 62.4 101 29.7
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-08 62.4 135 28.1
TPR.G24275 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-08 62.4 142 26.8
QL02p099277 Quercus lobata HOM05D000003 ORTHO05D000007 3.5e-08 62.0 128 26.6
Gorai.013G140300 Gossypium raimondii HOM05D000003 ORTHO05D000007 4.6e-08 61.6 127 28.3
Lj5g0016382 Lotus japonicus HOM05D000003 ORTHO05D000007 4.6e-08 61.6 143 25.9
QL06p011077 Quercus lobata HOM05D000003 ORTHO05D000007 4.6e-08 61.6 130 24.6
QL08p009646 Quercus lobata HOM05D000003 ORTHO05D000007 4.6e-08 61.6 140 25.7
Hma1.2p1_0010F.1_g006760 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 6.0e-08 61.2 115 33.9
QL03p025122 Quercus lobata HOM05D000003 ORTHO05D000007 6.0e-08 61.2 125 28.0
QL04p081254 Quercus lobata HOM05D000003 ORTHO05D000007 6.0e-08 61.2 125 26.4
Hma1.2p1_0828F.1_g225200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 7.9e-08 60.8 122 32.0
QL04p037455 Quercus lobata HOM05D000003 ORTHO05D000007 7.9e-08 60.8 132 25.0
PGR142G4317 Punica granatum HOM05D000003 ORTHO05D000007 1.0e-07 60.5 128 25.8
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-07 60.5 127 26.0
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-07 60.5 127 26.0
Lj5g0001706 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-07 60.1 109 29.4
PSO017G4416 Papaver somniferum HOM05D000003 ORTHO05D000007 1.3e-07 60.1 145 27.6
QL05p001305 Quercus lobata HOM05D000003 ORTHO05D000007 1.3e-07 60.1 147 25.2
TPR.G20742 Trifolium pratense HOM05D000003 ORTHO05D000007 1.3e-07 60.1 128 27.3
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 1.8e-07 59.7 139 24.5
TPR.G29398 Trifolium pratense HOM05D000003 ORTHO05D000007 1.8e-07 59.7 139 25.2
FvH4_1g28741 Fragaria vesca HOM05D000003 ORTHO05D000007 2.3e-07 59.3 135 29.6
Lj4g0016016 Lotus japonicus HOM05D000003 ORTHO05D000007 2.3e-07 59.3 125 28.8
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 2.3e-07 59.3 133 26.3
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-07 58.9 146 25.3
Lj3g0015936 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-07 58.9 125 28.0
Lj4g0024296 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-07 58.9 143 25.2
Lj6g0020434 Lotus japonicus HOM05D013113 ORTHO05D000007 3.0e-07 58.9 125 28.8
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 3.0e-07 58.9 121 29.8
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 3.0e-07 58.9 137 26.3
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 3.0e-07 58.9 127 26.8
Cpa.g.sc4.197 Carica papaya HOM05D000003 ORTHO05D000007 3.9e-07 58.5 117 30.8
Lj1g0024982 Lotus japonicus HOM05D000003 ORTHO05D000007 3.9e-07 58.5 127 29.9
COL.COLO4_07245 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.1e-07 58.2 122 27.0
QL01p019582 Quercus lobata HOM05D000003 ORTHO05D000007 5.1e-07 58.2 130 24.6
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 5.1e-07 58.2 125 28.8
TPR.G17627 Trifolium pratense HOM05D000003 ORTHO05D000007 5.1e-07 58.2 150 24.0
Gorai.006G161900 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.7e-07 57.8 129 25.6
Lj3g0019048 Lotus japonicus HOM05D000003 ORTHO05D000007 6.7e-07 57.8 140 24.3
Lj4g0010109 Lotus japonicus HOM05D000003 ORTHO05D000007 6.7e-07 57.8 109 28.4
Psat2g047680 Pisum sativum HOM05D000003 ORTHO05D000007 6.7e-07 57.8 125 25.6
RcHm_v2.0_Chr2g0171821 Rosa chinensis HOM05D000003 ORTHO05D000007 8.7e-07 57.4 125 29.6
TPR.G28232 Trifolium pratense HOM05D000003 ORTHO05D000007 8.7e-07 57.4 109 32.1
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.1e-06 57.0 126 26.2
Gorai.N011700 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.1e-06 57.0 127 29.1
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 1.1e-06 57.0 109 34.9
QL12p006495 Quercus lobata HOM05D000003 ORTHO05D000007 1.1e-06 57.0 136 27.2
RcHm_v2.0_Chr7g0187781 Rosa chinensis HOM05D000003 ORTHO05D000007 1.1e-06 57.0 134 29.9
QL02p014176 Quercus lobata HOM05D000003 ORTHO05D000007 1.5e-06 56.6 122 26.2
QL03p025414 Quercus lobata HOM05D000003 ORTHO05D000007 1.5e-06 56.6 130 23.1
RcHm_v2.0_Chr3g0492931 Rosa chinensis HOM05D000003 ORTHO05D000007 1.5e-06 56.6 134 29.9
EL10Ac2g02510 Beta vulgaris HOM05D000003 ORTHO05D000007 2.5e-06 55.8 104 29.8
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 3.3e-06 55.5 137 24.8
Nn1g06939 Nelumbo nucifera HOM05D000003 ORTHO05D000007 3.3e-06 55.5 149 24.8
QL02p074972 Quercus lobata HOM05D000003 ORTHO05D000007 3.3e-06 55.5 122 27.9
QL10p029845 Quercus lobata HOM05D000003 ORTHO05D000007 4.3e-06 55.1 126 23.8
TPR.G14601 Trifolium pratense HOM05D000003 ORTHO05D000007 4.3e-06 55.1 126 23.8
TPR.G17626 Trifolium pratense HOM05D000003 ORTHO05D000007 4.3e-06 55.1 139 24.5
COL.COLO4_12097 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.6e-06 54.7 121 26.4
Lj2g0015907 Lotus japonicus HOM05D000003 ORTHO05D000007 7.4e-06 54.3 50 44.0
Lj4g0024417 Lotus japonicus HOM05D013113 ORTHO05D000007 7.4e-06 54.3 121 28.9
Lj5g0009117 Lotus japonicus HOM05D000003 ORTHO05D029824 7.4e-06 54.3 53 41.5
Lj6g0024012 Lotus japonicus HOM05D000003 ORTHO05D000007 7.4e-06 54.3 143 24.5
Gorai.004G149800 Gossypium raimondii HOM05D023395 ORTHO05D047126 9.6e-06 53.9 105 30.5


User provided reference genes

Program Settings