Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14076 Davidia involucrata HOM05D003108 ORTHO05D000003 1.6e-103 379.4 186 100.0
TAR636G3096 Trochodendron aralioides HOM05D003108 ORTHO05D000003 3.0e-54 215.7 184 61.4
Nn1g02558 Nelumbo nucifera HOM05D003108 ORTHO05D000003 1.2e-50 203.8 150 69.3
Ciclev10021384m.g Citrus clementina HOM05D003108 ORTHO05D000003 5.7e-45 184.9 185 54.6
Dinv34566 Davidia involucrata HOM05D003108 ORTHO05D000003 1.3e-44 183.7 184 57.6
Sabra05G0167200 Salix brachista HOM05D003108 ORTHO05D000003 2.2e-44 183.0 178 52.8
Potri.002G045100 Populus trichocarpa HOM05D003108 ORTHO05D000003 4.8e-44 181.8 180 57.2
Gorai.001G242700 Gossypium raimondii HOM05D003108 ORTHO05D000003 8.2e-44 181.0 183 56.8
Gohir.D07G214700 Gossypium hirsutum HOM05D003108 ORTHO05D000003 1.1e-43 180.6 183 56.8
Sabra02G0036200 Salix brachista HOM05D003108 ORTHO05D000003 1.1e-43 180.6 180 55.0
CDE07G1157 Ceratophyllum demersum HOM05D003108 ORTHO05D000003 1.4e-43 180.3 126 69.0
Potri.005G218100 Populus trichocarpa HOM05D003108 ORTHO05D000003 1.4e-43 180.3 178 52.2
Thecc.01G267800 Theobroma cacao HOM05D003108 ORTHO05D000003 7.0e-43 177.9 179 57.5
RcHm_v2.0_Chr6g0289591 Rosa chinensis HOM05D003108 ORTHO05D000003 1.6e-42 176.8 157 58.6
Gohir.A07G208800 Gossypium hirsutum HOM05D003108 ORTHO05D000003 2.0e-42 176.4 182 56.6
GSVIVG01000719001 Vitis vinifera HOM05D003108 ORTHO05D000003 7.7e-42 174.5 128 63.3
CANSAT01G1651 Cannabis sativa HOM05D003108 ORTHO05D000003 2.9e-41 172.6 176 54.5
MD10G1193100 Malus domestica HOM05D003108 ORTHO05D000003 3.8e-41 172.2 143 60.8
ClCG09G007510 Citrullus lanatus HOM05D003108 ORTHO05D000003 5.0e-41 171.8 176 53.4
TWI18G1277 Tripterygium wilfordii HOM05D003108 ORTHO05D000003 5.0e-41 171.8 141 60.3
Aqoxy5G00353 Aquilegia oxysepala HOM05D003108 ORTHO05D000003 6.5e-41 171.4 187 51.9
CSS0046317 Camellia sinensis var. sinensis HOM05D003108 ORTHO05D000003 6.5e-41 171.4 202 50.5
FvH4_2g22540 Fragaria vesca HOM05D003108 ORTHO05D000003 8.5e-41 171.0 149 59.1
FAN24G1535 Fragaria x ananassa HOM05D003108 ORTHO05D000003 8.5e-41 171.0 149 59.1
ATR0665G417 Amborella trichopoda HOM05D003108 ORTHO05D000003 1.1e-40 170.6 128 61.7
COL.COLO4_06080 Corchorus olitorius HOM05D003108 ORTHO05D000003 1.9e-40 169.9 184 52.7
Lj1A57T48 Lonicera japonica HOM05D003108 ORTHO05D000003 4.2e-40 168.7 193 50.3
Duzib211G0146 Durio zibethinus HOM05D003108 ORTHO05D000003 5.5e-40 168.3 181 51.4
FAN15G1244 Fragaria x ananassa HOM05D003108 ORTHO05D000003 5.5e-40 168.3 152 56.6
CiPaw.04G181600 Carya illinoinensis HOM05D003108 ORTHO05D000003 9.4e-40 167.5 153 57.5
FAN20G1494 Fragaria x ananassa HOM05D003108 ORTHO05D000003 9.4e-40 167.5 156 57.7
MD05G1206000 Malus domestica HOM05D003108 ORTHO05D000003 9.4e-40 167.5 112 70.5
Prupe.8G232500 Prunus persica HOM05D003108 ORTHO05D000003 9.4e-40 167.5 144 58.3
FAN27G2883 Fragaria x ananassa HOM05D003108 ORTHO05D000003 1.2e-39 167.2 145 57.2
Manes.05G084100 Manihot esculenta HOM05D003108 ORTHO05D000003 1.2e-39 167.2 122 65.6
Hma1.2p1_1208F.1_g267070 Hydrangea macrophylla HOM05D003108 ORTHO05D000003 1.6e-39 166.8 110 71.8
Cpa.g.sc52.95 Carica papaya HOM05D003108 ORTHO05D000003 2.1e-39 166.4 166 52.4
Nitab4.5_0001556g0080 Nicotiana tabacum HOM05D003108 ORTHO05D000003 2.1e-39 166.4 192 50.5
Atru.chr5.1560 Acer truncatum HOM05D003108 ORTHO05D000003 2.7e-39 166.0 110 70.9
MELO3C015761.2 Cucumis melo HOM05D003108 ORTHO05D000003 4.7e-39 165.2 180 51.7
Oeu002277.1 Olea europaea HOM05D003108 ORTHO05D000003 6.1e-39 164.9 193 51.3
MSTRG.28027 Avicennia marina HOM05D003108 ORTHO05D000003 2.3e-38 162.9 110 70.9
CsaV3_7G027620 Cucumis sativus L. HOM05D003108 ORTHO05D000003 2.3e-38 162.9 180 50.6
PSO210G4773 Papaver somniferum HOM05D003108 ORTHO05D000003 2.3e-38 162.9 139 59.0
Cfa002322 Carpinus fangiana HOM05D003108 ORTHO05D000003 3.0e-38 162.5 167 54.5
Eucgr.B01490 Eucalyptus grandis HOM05D003108 ORTHO05D000003 5.2e-38 161.8 178 52.8
Peaxi162Scf00049g02222 Petunia axillaris HOM05D003108 ORTHO05D000003 5.2e-38 161.8 192 49.5
Ah.02g111620 Amaranthus hybridus HOM05D003108 ORTHO05D000003 1.2e-37 160.6 159 55.3
SalBow3G4550 Salvia bowleyana HOM05D003108 ORTHO05D000003 2.0e-37 159.8 187 51.3
unitig_578.g16421 Utricularia gibba HOM05D003108 ORTHO05D000003 2.0e-37 159.8 110 68.2
Sopen09g027630 Solanum pennellii HOM05D003108 ORTHO05D000003 4.4e-37 158.7 187 47.1
Migut.N02181 Erythranthe guttata HOM05D003108 ORTHO05D000003 7.5e-37 157.9 187 50.3
Psat0s1875g0120 Pisum sativum HOM05D003108 ORTHO05D000003 7.5e-37 157.9 170 51.2
Solyc09g065840.3 Solanum lycopersicum HOM05D003108 ORTHO05D000003 7.5e-37 157.9 187 47.1
Haze_24527 Corylus avellana HOM05D003108 ORTHO05D000003 1.3e-36 157.1 135 59.3
Duzib133G1186 Durio zibethinus HOM05D003108 ORTHO05D000003 1.3e-36 157.1 117 64.1
arahy.Tifrunner.gnm1.ann1.20NWG8 Arachis hypogaea HOM05D003108 ORTHO05D000003 1.7e-36 156.8 118 61.9
arahy.Tifrunner.gnm1.ann1.B2TI6B Arachis hypogaea HOM05D003108 ORTHO05D000003 1.7e-36 156.8 118 61.9
PSO210G6998 Papaver somniferum HOM05D003108 ORTHO05D000003 1.7e-36 156.8 148 55.4
DCAR_002687 Daucus carota HOM05D003108 ORTHO05D000003 2.2e-36 156.4 197 49.7
AUR62011944 Chenopodium quinoa HOM05D003108 ORTHO05D000003 2.8e-36 156.0 125 62.4
AUR62032259 Chenopodium quinoa HOM05D003108 ORTHO05D000003 2.8e-36 156.0 125 62.4
PGSC0003DMG400019333 Solanum tuberosum HOM05D003108 ORTHO05D000003 4.8e-36 155.2 188 47.9
CAN.G1072.3 Capsicum annuum HOM05D003108 ORTHO05D000003 6.3e-36 154.8 190 48.9
Lj5g0023638 Lotus japonicus HOM05D003108 ORTHO05D000003 6.3e-36 154.8 110 63.6
Medtr1g070840 Medicago truncatula HOM05D003108 ORTHO05D000003 6.3e-36 154.8 187 48.1
HanXRQChr01g0006861 Helianthus annuus HOM05D003108 ORTHO05D000003 1.1e-35 154.1 103 69.9
EL10Ac5g10472 Beta vulgaris HOM05D003108 ORTHO05D000003 4.1e-35 152.1 125 60.0
Sc05g0001020 Simmondsia chinensis HOM05D003108 ORTHO05D000003 4.1e-35 152.1 110 67.3
Lj2A1160T38 Lonicera japonica HOM05D003108 ORTHO05D000003 5.3e-35 151.8 124 60.5
Ah.02g111490 Amaranthus hybridus HOM05D003108 ORTHO05D000003 9.1e-35 151.0 102 68.6
Lsat_1_v5_gn_5_186781 Lactuca sativa HOM05D003108 ORTHO05D000003 9.1e-35 151.0 104 66.3
Sed0004930 Sechium edule HOM05D003108 ORTHO05D000003 1.6e-34 150.2 161 50.9
ECA248G3289 Erigeron canadensis HOM05D003108 ORTHO05D000003 2.7e-34 149.4 110 67.3
Lalb_Chr02g0142441 Lupinus albus HOM05D003108 ORTHO05D000003 2.7e-34 149.4 131 53.4
TPR.G39062 Trifolium pratense HOM05D003108 ORTHO05D000003 4.5e-34 148.7 157 51.0
Glyma.10G031700 Glycine max HOM05D003108 ORTHO05D000003 5.9e-34 148.3 176 46.6
Ca_09717_v3 Cicer arietinum L. HOM05D003108 ORTHO05D000003 1.7e-33 146.7 185 47.0
Glyma.02G142700 Glycine max HOM05D003108 ORTHO05D000003 1.1e-32 144.1 170 45.9
HPP92_018437 Vanilla planifolia HOM05D003108 ORTHO05D000003 1.6e-31 140.2 172 45.3
VMungo0720G2958 Vigna mungo HOM05D003108 ORTHO05D000003 1.6e-31 140.2 171 47.4
Phvul.007G176800 Phaseolus vulgaris HOM05D003108 ORTHO05D000003 6.1e-31 138.3 145 49.0
Hund02877 Selenicereus undatus HOM05D003108 ORTHO05D000003 6.1e-31 138.3 138 55.1
Actinidia30710 Actinidia chinensis HOM05D003108 ORTHO05D000003 1.5e-29 133.7 160 50.0
SGA_v2.0_scaffold81G26059 Striga asiatica HOM05D003108 ORTHO05D000003 9.8e-29 131.0 121 53.7
Rhsim01G0270000 Rhododendron simsii HOM05D003108 ORTHO05D000003 4.8e-28 128.6 177 41.2
QL12p042654 Quercus lobata HOM05D003108 ORTHO05D000003 4.1e-27 125.6 167 45.5
Zm00001eb218850 Zea mays HOM05D003108 ORTHO05D000003 9.1e-27 124.4 177 42.9
Zm00001eb051050 Zea mays HOM05D003108 ORTHO05D000003 5.9e-26 121.7 179 41.3
Os03g0633900 Oryza sativa ssp. japonica HOM05D003108 ORTHO05D000003 8.6e-25 117.9 102 54.9
Sed0005343 Sechium edule HOM05D003108 ORTHO05D000003 3.3e-24 115.9 164 43.9
Nitab4.5_0000187g0150 Nicotiana tabacum HOM05D003108 ORTHO05D000003 1.9e-16 90.1 136 42.6
Mapoly0027s0128 Marchantia polymorpha HOM05D003108 ORTHO05D000003 1.8e-14 83.6 113 38.9
Pp3c21_1470 Physcomitrium patens HOM05D003108 ORTHO05D000003 4.0e-14 82.4 90 41.1
CBR_g19562 Chara braunii HOM05D003108 ORTHO05D000003 5.8e-13 78.6 107 41.1
Carub.0008s0348 Capsella rubella HOM05D004352 ORTHO05D000003 1.4e-11 73.9 84 42.9
AL8G14740 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 1.9e-11 73.6 112 39.3
AT5G44785 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 2.4e-11 73.2 84 45.2
TAR625G0703 Trochodendron aralioides HOM05D003108 ORTHO05D000003 3.2e-11 72.8 111 36.9
Actinidia24933 Actinidia chinensis HOM05D003108 ORTHO05D000003 5.4e-11 72.0 56 62.5
CARHR178090 Cardamine hirsuta HOM05D004352 ORTHO05D000003 5.4e-11 72.0 95 41.1
Cpa.g.sc30.130 Carica papaya HOM05D004352 ORTHO05D000003 7.0e-11 71.6 151 30.5
AT4G20010 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 9.2e-11 71.2 87 43.7
PSO063G0960 Papaver somniferum HOM05D004352 ORTHO05D000003 1.2e-10 70.9 103 37.9
Thhalv10008085m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 2.7e-10 69.7 129 31.8
Nn8g40402 Nelumbo nucifera HOM05D004352 ORTHO05D000003 2.7e-10 69.7 119 32.8
AagrBONN_evm.TU.Sc2ySwM_228.502 Anthoceros agrestis HOM05D003108 ORTHO05D000003 3.5e-10 69.3 96 32.3
AL7G33850 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 3.5e-10 69.3 89 42.7
Carub.0001s2940 Capsella rubella HOM05D004352 ORTHO05D000003 3.5e-10 69.3 114 29.8
CARHR226800 Cardamine hirsuta HOM05D004352 ORTHO05D000003 3.5e-10 69.3 85 43.5
Ciclev10015693m.g Citrus clementina HOM05D004352 ORTHO05D000003 3.5e-10 69.3 91 36.3
Lj5P91T46 Lonicera japonica HOM05D003108 ORTHO05D000003 4.6e-10 68.9 50 66.0
TPR.G13680 Trifolium pratense HOM05D003108 ORTHO05D000003 4.6e-10 68.9 119 32.8
Aa31LG6G2430 Aethionema arabicum HOM05D004352 ORTHO05D000003 1.0e-09 67.8 87 39.1
AL1G45420 Arabidopsis lyrata HOM05D004352 ORTHO05D000003 1.3e-09 67.4 97 34.0
Carub.0007s2112 Capsella rubella HOM05D004352 ORTHO05D000003 1.3e-09 67.4 85 41.2
Thhalv10025547m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 1.7e-09 67.0 85 40.0
PSO421G0072 Papaver somniferum HOM05D004352 ORTHO05D000003 1.7e-09 67.0 83 43.4
vmacro14875 Vaccinium macrocarpon HOM05D003108 ORTHO05D000003 1.7e-09 67.0 47 66.0
Atru.chr10.647 Acer truncatum HOM05D004352 ORTHO05D000003 2.3e-09 66.6 113 34.5
CSS0020615 Camellia sinensis var. sinensis HOM05D003108 ORTHO05D000003 2.3e-09 66.6 116 31.9
CSS0040327 Camellia sinensis var. sinensis HOM05D003108 ORTHO05D000003 2.3e-09 66.6 116 31.9
DCAR_020138 Daucus carota HOM05D004352 ORTHO05D000003 2.3e-09 66.6 90 35.6
THA.LOC104806221 Tarenaya hassleriana HOM05D004352 ORTHO05D000003 2.3e-09 66.6 86 39.5
CDE02G3053 Ceratophyllum demersum HOM05D004352 ORTHO05D000003 3.0e-09 66.2 83 39.8
GSVIVG01029254001 Vitis vinifera HOM05D004352 ORTHO05D000003 3.9e-09 65.9 89 36.0
HanXRQChr05g0142011 Helianthus annuus HOM05D004352 ORTHO05D000003 5.0e-09 65.5 96 37.5
TAR625G0076 Trochodendron aralioides HOM05D004352 ORTHO05D000003 5.0e-09 65.5 87 35.6
Eucgr.B03962 Eucalyptus grandis HOM05D004352 ORTHO05D000003 6.6e-09 65.1 119 31.9
SEGI_33466 Sequoiadendron giganteum HOM05D003108 ORTHO05D000003 6.6e-09 65.1 69 42.0
AT1G31010 Arabidopsis thaliana HOM05D004352 ORTHO05D000003 8.6e-09 64.7 97 30.9
CARHR030540 Cardamine hirsuta HOM05D004352 ORTHO05D000003 8.6e-09 64.7 109 31.2
Lj4A49T80 Lonicera japonica HOM05D003108 ORTHO05D000003 8.6e-09 64.7 167 31.1
Rhsim01G0002900 Rhododendron simsii HOM05D004352 ORTHO05D000003 8.6e-09 64.7 88 37.5
Rhsim06G0033100 Rhododendron simsii HOM05D003108 ORTHO05D000003 8.6e-09 64.7 115 33.0
Aqoxy7G02951 Aquilegia oxysepala HOM05D004352 ORTHO05D000003 1.5e-08 63.9 108 29.6
Dinv25487 Davidia involucrata HOM05D004352 ORTHO05D000003 1.5e-08 63.9 97 34.0
Aqoxy7G02955 Aquilegia oxysepala HOM05D004352 ORTHO05D000003 1.9e-08 63.5 108 29.6
EL10Ac1g01814 Beta vulgaris HOM05D003108 ORTHO05D000003 1.9e-08 63.5 103 35.0
Thecc.02G005400 Theobroma cacao HOM05D004352 ORTHO05D000003 1.9e-08 63.5 95 33.7
vmacro13134 Vaccinium macrocarpon HOM05D004352 ORTHO05D000003 1.9e-08 63.5 96 34.4
THA.LOC104812701 Tarenaya hassleriana HOM05D004352 ORTHO05D000003 2.5e-08 63.2 96 34.4
Psat6g011160 Pisum sativum HOM05D003108 ORTHO05D000003 3.3e-08 62.8 141 30.5
CSS0042579 Camellia sinensis var. sinensis HOM05D004352 ORTHO05D000003 4.3e-08 62.4 89 36.0
Haze_22194 Corylus avellana HOM05D003108 ORTHO05D000003 4.3e-08 62.4 107 36.4
EL10Ac8g18326 Beta vulgaris HOM05D004352 ORTHO05D000003 5.6e-08 62.0 83 39.8
Thhalv10000889m.g Eutrema salsugineum HOM05D004352 ORTHO05D000003 7.3e-08 61.6 85 40.0
Prupe.4G108900 Prunus persica HOM05D004352 ORTHO05D000003 7.3e-08 61.6 105 29.5
SHI18056 Sapria himalayana HOM05D004352 ORTHO05D000003 7.3e-08 61.6 158 25.9
Manes.15G101900 Manihot esculenta HOM05D004352 ORTHO05D000003 9.5e-08 61.2 100 29.0
Actinidia01307 Actinidia chinensis HOM05D004352 ORTHO05D000003 1.2e-07 60.8 87 35.6
CiPaw.16G050200 Carya illinoinensis HOM05D003108 ORTHO05D000003 1.2e-07 60.8 152 30.3
PGR044G1339 Punica granatum HOM05D004352 ORTHO05D000003 1.2e-07 60.8 122 29.5
Cc06_g03620 Coffea canephora HOM05D004352 ORTHO05D000003 1.6e-07 60.5 114 34.2
ECA236G5076 Erigeron canadensis HOM05D004352 ORTHO05D000003 1.6e-07 60.5 97 33.0
Cfa020717 Carpinus fangiana HOM05D004352 ORTHO05D000003 2.1e-07 60.1 104 32.7
Hma1.2p1_0337F.1_g129250 Hydrangea macrophylla HOM05D003108 ORTHO05D000003 2.1e-07 60.1 111 33.3
Lsat_1_v5_gn_1_19080 Lactuca sativa HOM05D003108 ORTHO05D000003 2.1e-07 60.1 121 32.2
vmacro21575 Vaccinium macrocarpon HOM05D003108 ORTHO05D000003 2.1e-07 60.1 121 30.6
ATR0767G196 Amborella trichopoda HOM05D003108 ORTHO05D000003 2.8e-07 59.7 160 31.2
Lj2g0002936 Lotus japonicus HOM05D004352 ORTHO05D000003 2.8e-07 59.7 86 37.2
Hund09568 Selenicereus undatus HOM05D003108 ORTHO05D000003 3.6e-07 59.3 30 80.0
Nitab4.5_0007806g0010 Nicotiana tabacum HOM05D004352 ORTHO05D000003 4.7e-07 58.9 100 30.0
Haze_19032 Corylus avellana HOM05D004352 ORTHO05D000003 6.2e-07 58.5 111 32.4
Oeu026847.1 Olea europaea HOM05D004352 ORTHO05D000003 6.2e-07 58.5 93 34.4
Oeu035139.1 Olea europaea HOM05D004352 ORTHO05D000003 8.0e-07 58.2 87 33.3
PGSC0003DMG400001770 Solanum tuberosum HOM05D004352 ORTHO05D000003 8.0e-07 58.2 99 31.3
Oeu009567.1 Olea europaea HOM05D003108 ORTHO05D000003 1.1e-06 57.8 91 30.8
Peaxi162Scf00005g04212 Petunia axillaris HOM05D004352 ORTHO05D000003 1.1e-06 57.8 104 28.8
Hund17611 Selenicereus undatus HOM05D003108 ORTHO05D000003 1.1e-06 57.8 85 36.5
MBI14_g19446_MAGBIO Magnolia biondii HOM05D004352 ORTHO05D000003 1.4e-06 57.4 84 33.3
RcHm_v2.0_Chr5g0019771 Rosa chinensis HOM05D004352 ORTHO05D000003 1.4e-06 57.4 144 29.9
FAN21G2670 Fragaria x ananassa HOM05D004352 ORTHO05D000003 1.8e-06 57.0 110 33.6
Solyc09g007430.1 Solanum lycopersicum HOM05D004352 ORTHO05D000003 2.3e-06 56.6 88 31.8
Sopen09g002310 Solanum pennellii HOM05D004352 ORTHO05D000003 2.3e-06 56.6 88 31.8
MSTRG.10300 Avicennia marina HOM05D004352 ORTHO05D000003 3.1e-06 56.2 88 35.2
MD05G1254900 Malus domestica HOM05D004352 ORTHO05D000003 3.1e-06 56.2 110 33.6
Cfa013576 Carpinus fangiana HOM05D003108 ORTHO05D000003 4.0e-06 55.8 107 34.6
Ca_25626_v3 Cicer arietinum L. HOM05D004352 ORTHO05D000003 4.0e-06 55.8 83 34.9
Sp1g26870 Schrenkiella parvula HOM05D004352 ORTHO05D000003 4.0e-06 55.8 121 28.9
Rhsim06G0042100 Rhododendron simsii HOM05D003108 ORTHO05D000003 5.2e-06 55.5 141 27.7
Lalb_Chr14g0375371 Lupinus albus HOM05D004352 ORTHO05D000003 6.8e-06 55.1 136 31.6
Potri.001G394200 Populus trichocarpa HOM05D004352 ORTHO05D000003 6.8e-06 55.1 115 31.3
Psat1g050880 Pisum sativum HOM05D004352 ORTHO05D000003 8.9e-06 54.7 86 34.9
QL01p007347 Quercus lobata HOM05D004352 ORTHO05D000003 8.9e-06 54.7 97 32.0


User provided reference genes

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