Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1174.1 596 100.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.2e-282 976.1 612 83.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.7e-271 937.9 613 80.8
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-266 922.2 613 79.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.2e-259 898.3 613 77.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.3e-256 888.3 636 74.2
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.8e-255 885.2 613 75.7
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.5e-253 878.2 646 73.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 7.2e-251 870.5 642 72.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.6e-248 862.1 611 73.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.0e-245 852.4 613 72.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.9e-245 850.9 613 73.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.0e-244 850.1 613 73.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.0e-244 850.1 615 72.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.0e-244 850.1 693 67.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.7e-244 849.4 611 72.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.9e-244 848.6 641 69.9
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.8e-241 839.3 612 72.5
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 6.8e-241 837.4 615 71.2
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.5e-240 836.3 613 72.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 9.8e-240 833.6 613 72.8
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.8e-240 833.6 614 72.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 6.3e-239 830.9 641 68.2
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 8.3e-239 830.5 641 68.8
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 7.0e-238 827.4 614 71.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.0e-237 825.9 614 71.0
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 5.9e-237 824.3 612 71.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 7.8e-237 823.9 643 69.1
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-236 823.5 614 71.2
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.3e-236 823.2 614 71.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 5.0e-236 821.2 641 68.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.5e-235 819.7 615 69.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.5e-235 818.9 641 68.0
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.3e-235 818.5 614 70.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 3.3e-235 818.5 614 71.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 5.6e-235 817.8 643 67.5
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.2e-234 816.6 611 69.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 6.1e-234 814.3 614 70.4
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.0e-233 813.5 641 67.7
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.3e-233 812.4 645 67.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.0e-233 812.0 641 67.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 5.2e-233 811.2 612 70.8
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.8e-233 810.8 619 68.5
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.4e-232 808.5 642 68.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 9.8e-232 807.0 644 66.6
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.4e-231 804.3 643 66.6
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.4e-231 804.3 615 68.5
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 3.2e-230 802.0 618 67.8
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.3e-228 796.6 613 70.3
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.6e-228 793.9 640 67.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.9e-227 792.7 613 68.8
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.3e-227 791.6 605 68.9
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 7.3e-227 790.8 642 65.3
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 7.3e-227 790.8 622 67.7
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.8e-226 788.9 619 67.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.5e-224 783.1 616 68.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.4e-224 781.9 640 65.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.4e-224 781.6 613 66.9
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.3e-223 780.0 611 66.6
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.2e-223 779.2 612 66.2
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.9e-223 778.1 611 66.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 6.4e-223 777.7 616 66.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.4e-223 777.7 612 66.3
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 8.3e-223 777.3 611 66.1
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 9.2e-222 773.9 611 66.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.6e-221 773.1 613 66.4
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.6e-221 773.1 612 65.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.1e-221 772.7 612 65.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 7.8e-221 770.8 612 67.2
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.0e-220 768.8 626 66.0
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 2.5e-219 765.8 612 67.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 7.3e-219 764.2 613 65.6
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.6e-218 763.1 613 65.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.6e-218 763.1 647 63.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.6e-218 763.1 613 65.6
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.6e-218 761.9 614 65.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 6.2e-218 761.1 614 66.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 8.1e-218 760.8 613 64.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.1e-217 760.4 640 63.3
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 3.1e-217 758.8 608 66.0
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-216 756.9 642 63.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.5e-216 756.5 618 66.2
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.4e-216 755.4 613 64.8
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.9e-216 753.8 614 66.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.3e-215 753.4 618 65.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.3e-215 750.7 609 66.0
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 9.2e-214 747.3 615 65.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-212 743.4 615 65.0
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.0e-212 742.3 615 65.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.1e-212 741.5 616 64.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 6.6e-212 741.1 642 63.4
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 8.6e-212 740.7 588 67.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 8.6e-212 740.7 641 62.6
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.5e-211 740.0 614 64.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 4.3e-211 738.4 613 64.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.2e-210 736.9 614 64.7
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.1e-210 736.1 615 64.4
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 8.1e-210 734.2 559 70.8
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-208 729.9 619 64.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.0e-208 729.6 615 64.7
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.9e-207 725.7 625 62.7
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.9e-207 725.7 548 70.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.9e-207 724.9 615 63.6
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 8.4e-207 724.2 620 64.0
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.4e-206 723.4 614 64.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-201 707.2 612 60.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.2e-200 703.7 619 60.7
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.2e-199 699.5 611 60.7
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.4e-198 696.0 613 61.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-197 693.0 634 61.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.0e-192 676.4 616 60.1
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-188 663.3 620 60.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.6e-187 658.3 624 60.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.8e-184 648.3 532 67.9
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.9e-183 646.0 614 59.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-182 644.0 470 74.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.4e-182 643.7 622 57.1
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.2e-182 642.5 514 68.9
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.5e-176 623.6 612 56.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 6.5e-175 618.2 462 71.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.3e-169 598.6 456 72.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 9.0e-169 597.8 616 56.7
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.0e-167 592.0 612 53.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.3e-163 578.9 608 55.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.0e-159 565.5 517 61.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.9e-150 537.0 645 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.0e-148 529.6 558 53.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.1e-145 519.6 596 52.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 5.0e-143 512.3 650 46.0
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 9.4e-134 481.5 366 69.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.1e-116 423.3 428 57.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.7e-112 410.2 796 36.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.0e-103 380.2 248 78.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.7e-96 357.1 374 57.8
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 3.6e-85 320.1 364 50.0
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.3e-79 300.8 320 52.2
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-74 284.6 200 75.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.4e-68 264.2 172 80.8
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 6.1e-48 196.4 278 43.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.1e-40 171.4 122 72.1
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 8.8e-39 166.0 138 63.8
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 6.5e-34 149.8 124 60.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-32 145.2 303 37.3
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.6e-32 145.2 121 61.2
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 3.0e-31 141.0 410 30.7
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 5.9e-27 126.7 277 35.7
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.9e-26 124.4 300 32.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.7e-24 117.9 89 68.5
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 7.5e-22 109.8 356 33.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.4e-20 105.5 169 40.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.5e-19 100.9 70 71.4
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 7.7e-19 99.8 83 57.8
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.2e-17 94.4 94 55.3
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 5.7e-14 83.6 58 69.0
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.7e-11 74.7 63 50.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.3e-10 72.4 88 46.6
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.7e-10 72.0 51 66.7
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.5e-09 66.2 37 83.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.8e-08 64.7 60 55.0


User provided reference genes

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