Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 8.5e-78 293.5 139 100.0
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.6e-63 246.1 136 84.6
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 5.9e-63 244.2 138 83.3
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 5.0e-62 241.1 135 80.7
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 8.5e-62 240.4 136 81.6
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.5e-61 239.6 136 82.4
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 1.5e-61 239.6 136 81.6
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 7.2e-61 237.3 135 77.8
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 1.2e-60 236.5 135 77.0
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 2.7e-60 235.3 135 77.8
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 4.7e-60 234.6 137 78.1
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 1.8e-59 232.6 138 76.8
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 2.6e-58 228.8 137 79.6
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 4.4e-58 228.0 138 77.5
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 8.3e-57 223.8 138 76.1
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 1.1e-56 223.4 138 76.1
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 1.4e-56 223.0 140 75.7
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 4.1e-56 221.5 138 74.6
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 9.1e-56 220.3 140 73.6
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 1.2e-55 219.9 138 75.4
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 2.7e-55 218.8 138 72.5
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 2.7e-55 218.8 138 73.2
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 5.9e-55 217.6 140 74.3
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 5.9e-55 217.6 138 73.9
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 5.9e-55 217.6 138 74.6
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 1.0e-54 216.9 140 72.9
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 1.0e-54 216.9 138 73.2
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 1.3e-54 216.5 138 73.9
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.3e-54 216.5 139 72.7
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 2.3e-54 215.7 137 72.3
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 2.9e-54 215.3 139 71.9
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 2.9e-54 215.3 139 74.8
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 2.9e-54 215.3 138 69.6
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 2.9e-54 215.3 138 71.7
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 2.9e-54 215.3 138 73.9
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 3.8e-54 214.9 136 74.3
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 6.6e-54 214.2 137 71.5
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 6.6e-54 214.2 135 73.3
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 6.6e-54 214.2 137 73.7
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 1.9e-53 212.6 137 72.3
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 1.9e-53 212.6 136 72.8
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 2.5e-53 212.2 139 71.9
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 3.3e-53 211.8 136 72.8
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 4.3e-53 211.5 139 71.2
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 5.6e-53 211.1 139 72.7
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 7.2e-53 210.7 139 71.9
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 9.5e-53 210.3 137 70.8
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 9.5e-53 210.3 139 72.7
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 1.2e-52 209.9 129 72.1
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 1.6e-52 209.5 135 74.1
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 4.7e-52 208.0 138 73.2
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 6.1e-52 207.6 157 62.4
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 2.3e-51 205.7 138 69.6
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 4.0e-51 204.9 130 73.8
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 6.8e-51 204.1 128 75.0
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 6.8e-51 204.1 133 72.2
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 1.2e-50 203.4 137 70.1
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.2e-50 203.4 121 78.5
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 9.8e-50 200.3 133 69.9
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 2.9e-49 198.7 139 67.6
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 2.9e-49 198.7 139 71.2
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 3.7e-49 198.4 138 69.6
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 3.7e-49 198.4 133 68.4
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 1.8e-48 196.1 139 70.5
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 1.8e-48 196.1 133 68.4
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.8e-48 196.1 133 68.4
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 3.2e-48 195.3 133 66.9
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 3.2e-48 195.3 140 67.9
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 2.7e-47 192.2 133 67.7
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 3.5e-47 191.8 138 71.0
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 3.5e-47 191.8 105 86.7
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 4.6e-47 191.4 133 66.9
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 5.9e-47 191.0 133 66.2
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 5.9e-47 191.0 133 66.9
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 7.8e-47 190.7 133 66.9
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 1.0e-46 190.3 133 66.9
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 1.3e-46 189.9 133 67.7
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.3e-46 189.1 135 68.1
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 3.0e-46 188.7 132 66.7
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 1.1e-45 186.8 134 66.4
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 1.5e-45 186.4 104 83.7
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 2.5e-45 185.7 138 65.9
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 3.3e-45 185.3 133 64.7
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 5.6e-45 184.5 123 65.9
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.5e-45 183.7 104 83.7
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 1.6e-44 183.0 164 54.9
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 5.2e-43 177.9 164 57.9
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 4.4e-42 174.9 111 72.1
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 6.4e-41 171.0 140 59.3
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.4e-40 169.9 104 77.9
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 1.1e-37 160.2 101 75.2
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 4.7e-36 154.8 174 49.4
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 2.6e-34 149.1 137 54.0
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 9.8e-34 147.1 138 50.7
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 1.3e-33 146.7 106 65.1
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 3.7e-33 145.2 133 53.4
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 3.7e-33 145.2 131 49.6
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 4.9e-33 144.8 133 54.1
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 6.4e-33 144.4 134 47.8
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 1.4e-32 143.3 136 48.5
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 4.1e-32 141.7 138 50.0
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-32 141.0 139 48.2
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 2.1e-31 139.4 137 50.4
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 1.7e-30 136.3 141 53.9
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 5.1e-30 134.8 91 70.3
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 6.6e-30 134.4 128 55.5
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.5e-29 133.3 142 52.1
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.9e-29 132.9 86 68.6
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 6.2e-28 127.9 135 51.9
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 1.4e-27 126.7 111 55.9
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 4.1e-24 115.2 131 44.3
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 7.1e-24 114.4 74 71.6
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 6.6e-22 107.8 139 43.2
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 3.4e-18 95.5 100 46.0
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 1.7e-17 93.2 109 46.8
Actinidia25664 Actinidia chinensis HOM05D006838 ORTHO05D008915 4.9e-17 91.7 130 42.3
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 9.3e-16 87.4 92 51.1
RcHm_v2.0_Chr4g0432191 Rosa chinensis HOM05D006838 ORTHO05D008915 2.5e-13 79.3 53 67.9
Carub.0004s0937 Capsella rubella HOM05D000986 ORTHO05D000794 6.9e-11 71.2 133 33.1
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 1.2e-10 70.5 60 55.0
Aa31LG8G5270 Aethionema arabicum HOM05D000986 ORTHO05D000794 2.0e-10 69.7 133 33.1
AT2G28420 Arabidopsis thaliana HOM05D000986 ORTHO05D000794 2.6e-10 69.3 133 31.6
AL4G21600 Arabidopsis lyrata HOM05D000986 ORTHO05D000794 4.4e-10 68.6 133 30.8
Migut.K00971 Erythranthe guttata HOM05D006838 ORTHO05D008915 4.4e-10 68.6 58 55.2
FAN06G1695 Fragaria x ananassa HOM05D000986 ORTHO05D000794 9.9e-10 67.4 134 32.8
A07p18990 Brassica napus HOM05D000986 ORTHO05D000794 1.7e-09 66.6 133 31.6
C04p22960 Brassica napus HOM05D000986 ORTHO05D000794 1.7e-09 66.6 133 31.6
BolC4t23790H Brassica oleracea HOM05D000986 ORTHO05D000794 1.7e-09 66.6 133 31.6
BraA07t29604Z Brassica rapa HOM05D000986 ORTHO05D000794 1.7e-09 66.6 133 31.6
FvH4_7g01840 Fragaria vesca HOM05D000986 ORTHO05D000794 1.7e-09 66.6 134 32.8
Lsat_1_v5_gn_7_75940 Lactuca sativa HOM05D000986 ORTHO05D000794 1.7e-09 66.6 132 31.1
Sp4g11240 Schrenkiella parvula HOM05D000986 ORTHO05D000794 2.2e-09 66.2 133 31.6
Gohir.D12G103300 Gossypium hirsutum HOM05D000986 ORTHO05D000794 2.9e-09 65.9 140 32.1
Gorai.008G112300 Gossypium raimondii HOM05D000986 ORTHO05D000794 2.9e-09 65.9 140 32.1
Gohir.A12G100300 Gossypium hirsutum HOM05D000986 ORTHO05D000794 3.8e-09 65.5 140 31.4
CARHR121370 Cardamine hirsuta HOM05D000986 ORTHO05D000794 6.4e-09 64.7 133 30.1
Lsat_1_v5_gn_7_76640 Lactuca sativa HOM05D000986 ORTHO05D000794 1.4e-08 63.5 132 30.3
Actinidia13041 Actinidia chinensis HOM05D006838 ORTHO05D055396 2.4e-08 62.8 31 83.9
ATR0149G012 Amborella trichopoda HOM05D000986 ORTHO05D000794 3.2e-08 62.4 132 31.1
Ciclev10002584m.g Citrus clementina HOM05D000986 ORTHO05D000794 3.2e-08 62.4 131 30.5
Nitab4.5_0000787g0270 Nicotiana tabacum HOM05D000986 ORTHO05D000794 3.2e-08 62.4 132 28.8
FvH4_4g16350 Fragaria vesca HOM05D006838 ORTHO05D046149 4.2e-08 62.0 145 32.4
Nitab4.5_0000787g0200 Nicotiana tabacum HOM05D000986 ORTHO05D000794 4.2e-08 62.0 132 30.3
Solyc01g103630.4 Solanum lycopersicum HOM05D000986 ORTHO05D000794 4.2e-08 62.0 132 30.3
CAN.G2125.3 Capsicum annuum HOM05D000986 ORTHO05D000794 5.4e-08 61.6 132 28.8
ATR1156G049 Amborella trichopoda HOM05D000986 ORTHO05D000794 7.1e-08 61.2 133 29.3
CAN.G798.64 Capsicum annuum HOM05D000986 ORTHO05D000794 7.1e-08 61.2 132 28.8
Mapoly0031s0135 Marchantia polymorpha HOM05D000986 ORTHO05D000794 7.1e-08 61.2 133 29.3
arahy.Tifrunner.gnm1.ann1.ZP3NZP Arachis hypogaea HOM05D000986 ORTHO05D000794 9.3e-08 60.8 141 31.2
MELO3C023589.2 Cucumis melo HOM05D000986 ORTHO05D000794 9.3e-08 60.8 134 31.3
Peaxi162Scf00011g01126 Petunia axillaris HOM05D000986 ORTHO05D000794 9.3e-08 60.8 133 30.8
Peaxi162Scf00011g01219 Petunia axillaris HOM05D000986 ORTHO05D000794 9.3e-08 60.8 133 30.8
Aqoxy6G02374 Aquilegia oxysepala HOM05D000986 ORTHO05D000794 1.2e-07 60.5 132 31.8
Hund31461 Selenicereus undatus HOM05D000986 ORTHO05D000794 1.2e-07 60.5 135 30.4
Sopen01g046040 Solanum pennellii HOM05D000986 ORTHO05D000794 1.2e-07 60.5 132 29.5
PGSC0003DMG400024920 Solanum tuberosum HOM05D000986 ORTHO05D000794 1.2e-07 60.5 132 29.5
Mapoly0140s0028 Marchantia polymorpha HOM05D000986 ORTHO05D000794 1.6e-07 60.1 135 31.1
Nitab4.5_0004106g0010 Nicotiana tabacum HOM05D000986 ORTHO05D000794 1.6e-07 60.1 132 31.1
SMO343G0149 Selaginella moellendorffii HOM05D000986 ORTHO05D000794 2.1e-07 59.7 134 29.1
PGSC0003DMG400024895 Solanum tuberosum HOM05D000986 ORTHO05D000794 2.1e-07 59.7 132 28.0
CDE04G0314 Ceratophyllum demersum HOM05D000986 ORTHO05D000794 2.7e-07 59.3 132 29.5
CAN.G798.63 Capsicum annuum HOM05D000986 ORTHO05D000794 3.5e-07 58.9 132 28.0
Solyc01g103590.4 Solanum lycopersicum HOM05D000986 ORTHO05D000794 3.5e-07 58.9 132 29.5
Sopen01g045950 Solanum pennellii HOM05D000986 ORTHO05D000794 3.5e-07 58.9 132 29.5
CBR_g23810 Chara braunii HOM05D000986 ORTHO05D000794 4.6e-07 58.5 134 28.4
Nitab4.5_0007295g0010 Nicotiana tabacum HOM05D000986 ORTHO05D000794 4.6e-07 58.5 134 31.3
PSO541G1126 Papaver somniferum HOM05D000986 ORTHO05D000794 6.0e-07 58.2 132 29.5
Nitab4.5_0007295g0030 Nicotiana tabacum HOM05D000986 ORTHO05D000794 7.9e-07 57.8 132 27.3
MSTRG.20319 Avicennia marina HOM05D000986 ORTHO05D000794 1.3e-06 57.0 134 27.6
Nn5g27843 Nelumbo nucifera HOM05D000986 ORTHO05D000794 1.3e-06 57.0 133 30.1
Duzib132G0099 Durio zibethinus HOM05D000986 ORTHO05D000794 2.3e-06 56.2 132 28.0
Oeu045932.1 Olea europaea HOM05D000986 ORTHO05D000794 2.3e-06 56.2 133 29.3
FAN12G2595 Fragaria x ananassa HOM05D006838 ORTHO05D046149 3.9e-06 55.5 85 37.6
MD08G1241000 Malus domestica HOM05D000986 ORTHO05D000794 3.9e-06 55.5 133 30.1


User provided reference genes

Program Settings