Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.7e-117 426.0 211 100.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.7e-88 328.2 196 84.2
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 8.1e-88 327.4 193 87.0
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.3e-87 325.9 193 85.0
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.0e-87 325.1 193 82.9
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.9e-87 323.9 193 81.9
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.2e-86 323.6 194 83.0
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 2.0e-86 322.8 192 85.9
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.4e-86 322.0 193 83.9
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 4.4e-86 321.6 193 83.9
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 5.8e-86 321.2 192 82.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 5.8e-86 321.2 193 85.0
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.7e-85 319.7 195 86.2
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.1e-84 317.0 192 83.3
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.9e-84 316.2 192 80.7
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.9e-84 316.2 192 83.3
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.9e-84 316.2 193 82.4
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 4.1e-84 315.1 194 82.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.6e-83 311.6 182 86.3
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 6.0e-83 311.2 193 83.9
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 7.8e-83 310.8 192 83.9
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 7.8e-83 310.8 193 82.4
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.0e-82 310.5 195 81.5
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.3e-82 310.1 194 82.5
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.3e-82 310.1 196 83.2
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.7e-82 309.7 195 83.6
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.3e-82 309.3 198 81.3
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.3e-82 309.3 197 80.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.3e-82 309.3 195 81.5
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.0e-82 308.9 192 80.7
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.0e-82 308.9 195 80.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 3.0e-82 308.9 194 81.4
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.0e-82 308.9 195 81.0
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 5.1e-82 308.1 193 80.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 6.6e-82 307.8 193 81.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.9e-81 306.2 195 80.0
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.9e-81 306.2 194 83.0
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 2.5e-81 305.8 192 79.2
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.3e-81 304.3 195 79.5
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 7.3e-81 304.3 194 82.5
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 7.3e-81 304.3 194 82.0
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-80 303.5 195 80.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.6e-80 303.1 193 81.9
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-80 303.1 196 79.6
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.1e-80 302.8 192 80.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-80 302.8 196 80.1
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.1e-80 302.8 194 81.4
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.8e-80 302.4 191 82.7
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.8e-80 302.4 196 81.1
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.8e-80 302.4 196 81.1
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.6e-80 302.0 185 82.2
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.6e-80 302.0 194 79.4
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 3.6e-80 302.0 192 80.2
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.6e-80 302.0 194 78.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.2e-80 301.2 196 81.1
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 6.2e-80 301.2 195 81.0
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 6.2e-80 301.2 196 80.1
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 8.1e-80 300.8 193 78.8
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 8.1e-80 300.8 195 79.5
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-79 300.4 195 82.1
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-79 300.1 196 80.6
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.8e-79 299.7 193 82.9
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.8e-79 299.7 193 80.3
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.8e-79 299.7 193 79.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.4e-79 299.3 196 79.6
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.4e-79 299.3 197 79.2
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.1e-79 298.9 198 79.3
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.2e-78 297.0 198 78.8
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.2e-78 297.0 196 78.6
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.5e-78 296.6 191 81.7
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.0e-78 296.2 195 79.0
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.0e-78 296.2 196 79.1
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.0e-78 296.2 196 78.6
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.0e-78 296.2 196 79.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.0e-78 296.2 196 78.6
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.6e-78 295.8 204 76.5
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 7.6e-78 294.3 203 76.4
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 9.9e-78 293.9 193 78.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.3e-77 293.5 193 78.8
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.3e-77 293.5 194 79.4
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.7e-77 293.1 196 78.1
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.7e-77 293.1 197 79.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 3.8e-77 292.0 193 77.7
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.4e-77 291.2 192 78.6
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.9e-76 289.7 199 77.4
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 7.1e-76 287.7 198 77.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.3e-76 287.3 195 76.9
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 9.3e-76 287.3 196 75.5
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.2e-75 287.0 193 76.2
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.6e-75 286.6 193 76.7
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 4.6e-75 285.0 192 75.0
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 6.0e-75 284.6 194 74.2
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 6.0e-75 284.6 195 74.9
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-74 283.9 187 78.6
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.3e-74 283.5 192 77.1
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.3e-74 282.7 194 73.7
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.5e-73 280.0 192 74.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 5.6e-73 278.1 204 71.1
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 9.6e-73 277.3 206 73.8
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 9.6e-73 277.3 193 74.1
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 4.8e-72 275.0 195 76.4
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.5e-70 270.0 193 72.0
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.5e-70 270.0 197 71.1
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.0e-70 269.6 192 74.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.0e-70 269.6 194 76.3
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.6e-70 269.2 195 73.8
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.2e-69 266.2 196 70.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.2e-69 266.2 147 87.1
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.2e-69 266.2 195 72.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.8e-69 265.4 194 71.6
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.8e-69 265.4 196 71.4
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 6.4e-69 264.6 191 71.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 8.4e-69 264.2 132 93.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 8.4e-69 264.2 192 72.9
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.4e-68 263.5 193 70.5
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.9e-68 263.1 194 71.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.4e-68 262.7 196 68.9
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 3.2e-68 262.3 196 72.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 4.2e-68 261.9 132 93.2
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.2e-67 260.4 197 71.1
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 2.7e-67 259.2 197 69.5
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.7e-67 259.2 197 69.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.7e-67 259.2 200 69.5
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 2.7e-67 259.2 197 69.5
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 2.7e-67 259.2 197 69.5
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 4.6e-67 258.5 197 69.5
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.3e-66 256.9 165 75.8
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.3e-66 256.9 165 75.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.3e-66 256.1 132 91.7
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 6.6e-66 254.6 197 72.1
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.1e-65 253.8 130 92.3
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.9e-65 253.1 148 81.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.6e-64 250.0 192 70.3
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.6e-64 250.0 192 70.3
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 3.6e-64 248.8 175 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.8e-64 248.4 182 69.2
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 6.2e-64 248.1 192 67.2
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-62 243.8 138 84.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-62 243.8 138 84.8
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.4e-62 242.3 139 83.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 3.4e-62 242.3 158 75.3
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.5e-62 241.9 137 84.7
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 5.8e-62 241.5 134 85.1
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.8e-55 219.9 148 74.3
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.4e-55 219.5 192 60.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.5e-53 211.5 193 61.1
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.3e-50 203.0 143 69.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 8.7e-50 201.1 195 62.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 8.4e-45 184.5 124 80.6
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.6e-35 152.1 76 93.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.8e-32 142.9 74 91.9
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.8e-24 115.5 107 59.8
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.4e-23 114.0 107 60.7
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 5.3e-23 112.1 107 59.8
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 6.5e-13 78.6 93 51.6
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 4.4e-09 65.9 94 43.6
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 9.8e-09 64.7 81 50.6


User provided reference genes

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