Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 2.8e-162 575.5 344 100.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.5e-115 419.5 343 74.9
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.1e-89 334.3 332 66.9
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.5e-88 329.3 316 68.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.2e-85 320.9 315 65.4
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.7e-85 319.7 334 65.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.0e-84 317.8 311 65.6
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-82 310.8 311 65.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.8e-79 299.3 340 57.6
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 6.1e-77 292.0 321 55.1
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.0e-77 291.6 361 59.0
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 8.0e-77 291.6 350 56.9
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.0e-76 291.2 326 54.0
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.2e-76 288.9 353 56.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.4e-75 286.2 321 57.6
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.4e-75 286.2 301 62.8
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 6.3e-74 282.0 327 59.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 8.3e-74 281.6 296 65.5
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.4e-73 280.0 306 63.4
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 3.5e-72 276.2 302 64.2
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 5.9e-72 275.4 312 59.6
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.0e-71 274.6 316 56.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.3e-71 273.5 311 58.5
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.0e-71 272.3 311 58.2
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.6e-71 271.9 318 60.7
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.5e-70 270.8 300 60.0
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.8e-69 266.5 293 64.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.7e-69 265.8 334 57.8
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.7e-69 265.8 331 55.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 8.0e-69 265.0 329 51.7
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 8.0e-69 265.0 289 63.0
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.4e-68 264.2 319 57.4
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 5.2e-68 262.3 290 61.4
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.5e-67 260.8 327 57.8
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.5e-67 260.8 311 57.2
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 9.8e-67 258.1 322 59.0
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 9.8e-67 258.1 298 58.4
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.7e-66 257.3 316 56.0
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.2e-66 256.9 347 52.7
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 3.7e-66 256.1 336 58.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 6.4e-66 255.4 289 60.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.4e-65 254.2 251 59.4
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.8e-65 253.8 336 57.7
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 3.2e-65 253.1 331 56.2
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 5.4e-65 252.3 323 58.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 5.4e-65 252.3 329 52.6
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.0e-65 251.9 320 57.5
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.3e-63 247.7 291 59.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 3.9e-63 246.1 324 59.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 8.6e-63 245.0 296 57.4
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-62 244.6 320 56.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 4.3e-62 242.7 292 55.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.6e-62 242.3 343 55.4
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 7.3e-62 241.9 320 55.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 9.5e-62 241.5 293 59.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.2e-61 241.1 329 53.5
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.1e-61 240.4 306 57.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.7e-61 239.2 295 49.2
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.0e-60 238.0 306 60.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.0e-60 238.0 310 50.6
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.3e-60 236.9 292 59.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.3e-60 236.9 329 54.1
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 6.8e-60 235.3 308 58.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.8e-60 235.3 316 53.5
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 8.9e-60 235.0 321 55.5
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.9e-60 235.0 323 54.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-59 234.2 321 61.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 4.4e-59 232.6 299 56.5
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 4.4e-59 232.6 297 53.2
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 5.8e-59 232.3 316 54.4
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 5.8e-59 232.3 336 54.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 7.5e-59 231.9 318 56.0
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 7.5e-59 231.9 291 57.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 7.5e-59 231.9 308 57.1
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.7e-58 230.7 323 53.9
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.2e-58 230.3 323 53.9
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.9e-58 229.9 375 49.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.4e-58 228.8 306 51.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.4e-57 227.6 318 56.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.4e-57 226.9 327 53.2
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 3.2e-57 226.5 328 52.1
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 5.4e-57 225.7 325 55.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-57 225.7 325 55.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 5.4e-57 225.7 325 55.7
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 7.0e-57 225.3 320 55.9
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.2e-56 224.6 302 56.3
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.6e-56 224.2 298 60.4
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-56 223.8 310 51.0
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 7.8e-56 221.9 315 53.7
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-55 221.1 322 50.6
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.3e-55 221.1 286 58.0
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 3.0e-55 219.9 312 53.2
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 3.0e-55 219.9 301 56.1
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.3e-54 216.5 384 47.7
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 5.6e-54 215.7 317 55.2
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 7.3e-54 215.3 298 54.7
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.3e-54 215.3 330 55.2
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.8e-53 213.4 296 49.7
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 4.7e-53 212.6 311 51.8
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.7e-53 212.6 304 48.0
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-52 211.5 311 51.4
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.2e-52 209.1 301 54.8
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.8e-52 208.8 311 51.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.5e-51 207.6 302 55.3
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.5e-51 207.6 317 54.3
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.6e-51 206.8 302 52.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.8e-51 205.7 308 43.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.8e-51 205.7 325 51.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 2.2e-50 203.8 318 50.3
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.7e-50 203.0 283 52.3
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.6e-48 197.6 278 52.5
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 4.6e-48 196.1 337 50.4
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.3e-47 193.7 327 48.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.0e-47 193.4 292 44.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.0e-47 193.4 295 54.9
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.2e-45 188.0 310 44.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-45 187.2 148 67.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.8e-45 186.8 282 51.8
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.4e-44 184.5 282 51.4
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 8.9e-44 181.8 280 47.5
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.7e-42 177.6 314 51.3
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.7e-42 176.4 131 73.3
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 8.4e-42 175.3 285 52.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.2e-41 171.8 324 51.5
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.6e-40 171.0 325 42.5
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 4.6e-40 169.5 218 55.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-40 169.5 324 52.2
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 6.0e-40 169.1 318 41.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.7e-39 167.5 231 56.7
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.9e-39 166.4 284 46.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 4.3e-38 162.9 342 43.0
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 9.6e-38 161.8 308 44.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 3.6e-37 159.8 236 47.0
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.0e-35 154.1 300 41.7
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.3e-34 151.4 294 44.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.2e-34 150.6 277 50.5
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 4.2e-33 146.4 301 42.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.7e-32 143.7 340 41.2
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 7.8e-32 142.1 205 54.6
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-31 141.0 115 66.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 6.6e-31 139.0 195 46.7
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.3e-30 135.6 274 51.5
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.8e-29 133.7 148 54.7
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.3e-26 124.8 150 54.7
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.7e-26 124.4 295 36.6
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.3e-25 118.6 269 37.2
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 4.6e-24 116.3 291 35.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.5e-22 111.3 117 57.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.5e-22 110.5 227 37.9
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.4e-19 100.1 163 46.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 7.6e-19 99.0 328 33.2
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.2e-17 93.6 310 37.4
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.5e-16 90.1 329 40.4
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 9.0e-12 75.5 98 45.9
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 7.6e-11 72.4 294 39.5
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 8.4e-10 68.9 168 37.5
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 1.1e-06 58.5 50 68.0
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.5e-06 58.2 152 37.5


User provided reference genes

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