Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13940 Davidia involucrata HOM05D000147 ORTHO05D005950 7.7e-80 300.4 154 100.0
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 1.2e-35 153.7 149 61.7
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 4.1e-33 145.2 161 57.1
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 4.3e-30 135.2 146 57.5
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 3.6e-29 132.1 160 56.2
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 3.1e-28 129.0 157 54.1
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 4.4e-27 125.2 155 50.3
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 5.8e-27 124.8 154 51.9
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 1.4e-25 120.2 147 54.4
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 1.9e-25 119.8 147 51.0
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.2e-24 117.1 147 46.9
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 1.5e-22 110.2 167 46.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.8e-21 105.9 118 56.8
CiPaw.09G098300 Carya illinoinensis HOM05D000147 ORTHO05D005950 1.8e-20 103.2 169 45.0
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 1.8e-20 103.2 147 46.9
Sc24g0000260 Simmondsia chinensis HOM05D000147 ORTHO05D005950 2.4e-20 102.8 172 43.0
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 5.3e-20 101.7 167 42.5
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 6.9e-20 101.3 145 45.5
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 1.2e-19 100.5 168 43.5
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 2.0e-19 99.8 167 43.7
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 2.0e-19 99.8 170 42.4
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 7.6e-19 97.8 152 45.4
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 7.6e-19 97.8 148 48.0
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 7.6e-19 97.8 174 43.7
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 9.9e-19 97.4 170 41.8
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 3.8e-18 95.5 174 42.5
Cpa.g.sc4613.2 Carica papaya HOM05D000147 ORTHO05D005950 6.4e-18 94.7 86 60.5
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 6.4e-18 94.7 172 41.9
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 6.4e-18 94.7 173 40.5
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 8.4e-18 94.4 169 42.0
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 1.4e-17 93.6 178 41.0
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.4e-17 93.6 167 41.3
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 2.4e-17 92.8 147 44.2
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 2.4e-17 92.8 89 52.8
AUR62015275 Chenopodium quinoa HOM05D000147 ORTHO05D005950 9.3e-17 90.9 95 51.6
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 9.3e-17 90.9 174 40.2
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 9.3e-17 90.9 157 39.5
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 2.1e-16 89.7 132 42.4
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 3.5e-16 89.0 157 42.0
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 7.9e-16 87.8 156 42.3
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 7.9e-16 87.8 71 60.6
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 1.3e-15 87.0 174 40.8
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 1.7e-15 86.7 73 65.8
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 3.0e-15 85.9 153 42.5
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 6.6e-15 84.7 150 43.3
FAN25G1544 Fragaria x ananassa HOM05D000147 ORTHO05D005950 8.7e-15 84.3 152 40.8
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 1.1e-14 84.0 152 41.4
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 1.9e-14 83.2 64 70.3
Peaxi162Scf00294g00915 Petunia axillaris HOM05D000147 ORTHO05D005950 1.9e-14 83.2 126 44.4
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.5e-14 82.8 71 60.6
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 3.3e-14 82.4 172 40.1
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 3.3e-14 82.4 212 34.4
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 3.3e-14 82.4 108 49.1
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 7.3e-14 81.3 152 41.4
PGSC0003DMG401021461 Solanum tuberosum HOM05D000147 ORTHO05D005950 9.6e-14 80.9 158 44.9
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 2.1e-13 79.7 71 59.2
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 2.8e-13 79.3 143 41.3
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 6.2e-13 78.2 173 40.5
Prupe.4G014800 Prunus persica HOM05D000147 ORTHO05D005950 6.2e-13 78.2 163 38.0
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 1.1e-12 77.4 151 40.4
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 1.4e-12 77.0 173 39.9
FAN14G4662 Fragaria x ananassa HOM05D000147 ORTHO05D005950 2.4e-12 76.3 151 41.1
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 3.1e-12 75.9 97 45.4
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 4.0e-12 75.5 183 36.6
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 4.0e-12 75.5 164 35.4
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 6.9e-12 74.7 72 50.0
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 1.2e-11 73.9 150 44.0
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 2.0e-11 73.2 173 38.2
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 3.4e-11 72.4 150 43.3
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 9.9e-11 70.9 95 44.2
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 8.4e-10 67.8 154 34.4
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 1.1e-09 67.4 168 31.0
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 1.4e-09 67.0 212 32.1
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 1.4e-09 67.0 171 32.7
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 1.4e-09 67.0 90 42.2
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 1.4e-09 67.0 158 33.5
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 1.9e-09 66.6 161 34.8
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 1.9e-09 66.6 173 37.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.3e-09 64.3 93 45.2
CDE07G0653 Ceratophyllum demersum HOM05D000147 ORTHO05D005950 1.2e-08 63.9 70 47.1
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 1.2e-08 63.9 162 32.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.6e-08 63.5 94 37.2
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 2.7e-08 62.8 93 40.9
BolC1t03044H Brassica oleracea HOM05D000147 ORTHO05D005950 3.5e-08 62.4 75 48.0
RcHm_v2.0_Chr5g0002051 Rosa chinensis HOM05D000147 ORTHO05D005950 4.6e-08 62.0 68 50.0
Glyma.04G157800 Glycine max HOM05D000147 ORTHO05D005950 6.0e-08 61.6 62 53.2
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 6.0e-08 61.6 71 47.9
BcaC09g49931 Brassica carinata HOM05D000147 ORTHO05D005950 7.9e-08 61.2 95 40.0
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 1.0e-07 60.8 155 34.2
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 1.0e-07 60.8 115 33.0
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 1.3e-07 60.5 115 33.9
BcaC04g21269 Brassica carinata HOM05D000147 ORTHO05D005950 2.3e-07 59.7 106 34.0
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 2.3e-07 59.7 70 47.1
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 3.0e-07 59.3 93 41.9
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 3.9e-07 58.9 176 32.4
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 3.9e-07 58.9 90 41.1
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 5.1e-07 58.5 181 30.4
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 5.1e-07 58.5 166 34.9
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 5.1e-07 58.5 166 32.5
Oeu013829.1 Olea europaea HOM05D000147 ORTHO05D005950 8.7e-07 57.8 90 42.2
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 1.5e-06 57.0 157 34.4
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 2.5e-06 56.2 115 32.2
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 4.3e-06 55.5 77 44.2
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 4.3e-06 55.5 98 42.9
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 5.6e-06 55.1 87 43.7


User provided reference genes

Program Settings