Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 2761.5 1441 100.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 2097.4 1515 75.8
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 0.0e+00 1397.1 1456 56.7
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1374.0 1345 59.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1313.5 1488 54.5
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 0.0e+00 1306.2 1342 57.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1301.6 1360 56.9
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1301.2 1556 52.8
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1280.8 1539 52.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1272.3 1543 52.0
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1269.2 1543 51.9
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 0.0e+00 1259.6 1353 55.9
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1246.5 1501 52.2
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1188.7 1491 52.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1181.8 1503 51.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 1175.2 1452 51.4
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 1158.7 1502 51.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1144.0 1509 50.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1142.5 1498 50.1
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 0.0e+00 1142.5 1462 49.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1137.9 1499 49.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1134.8 1498 49.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1116.3 1433 50.2
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1111.7 1527 49.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 0.0e+00 1111.3 1509 47.8
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1094.3 1481 50.1
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1086.6 1433 49.8
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 0.0e+00 1084.3 1425 49.1
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 0.0e+00 1078.5 1426 48.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.0e-311 1073.2 1456 49.1
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.3e-308 1061.6 1507 47.0
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 7.0e-308 1061.2 1495 48.4
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 3.8e-306 1055.4 1500 48.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.1e-305 1053.9 1517 47.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.1e-300 1037.3 1469 47.9
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.0e-300 1034.6 1382 49.1
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.6e-299 1033.5 1502 47.5
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.5e-297 1026.9 1478 47.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 3.6e-296 1022.3 1483 47.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.5e-294 1016.9 1427 48.0
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.8e-290 1002.3 1524 45.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 5.0e-290 1001.9 1466 46.0
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 3.3e-289 999.2 1465 46.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.1e-288 996.5 1521 45.3
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.4e-284 981.9 1314 50.2
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.4e-276 955.3 1283 48.1
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 6.0e-275 951.8 1522 44.8
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.7e-274 950.3 1494 45.6
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.2e-272 941.8 1370 46.4
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.8e-271 940.3 1388 45.7
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-270 937.6 1518 44.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.4e-262 909.4 1344 45.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 5.8e-262 908.7 1552 42.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 7.8e-259 898.3 1341 46.5
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.9e-258 896.0 1324 46.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 6.6e-258 895.2 1318 46.8
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 6.2e-256 888.6 1554 43.8
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 8.1e-256 888.3 1260 47.8
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.8e-255 887.1 1429 44.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.1e-255 886.3 972 53.5
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 9.0e-255 884.8 1481 43.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.8e-245 852.8 1483 41.8
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.1e-243 847.0 1388 43.1
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.0e-242 844.7 1244 46.1
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 4.8e-240 835.9 1215 46.5
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.9e-239 832.0 1345 44.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.0e-238 830.5 1218 46.1
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.6e-235 819.3 1473 41.6
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 6.0e-235 818.9 1476 42.1
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.6e-232 810.8 1458 42.9
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.8e-232 809.3 1240 45.2
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 6.3e-224 782.3 1386 43.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.4e-220 771.2 1227 43.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-218 764.2 1168 44.7
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 9.7e-217 758.4 1291 42.8
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 8.2e-216 755.4 1504 39.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 8.5e-213 745.3 1481 39.8
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.4e-199 700.7 1453 39.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 3.8e-197 693.3 1374 39.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 5.5e-196 689.5 1450 38.8
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.7e-195 686.4 660 59.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.8e-192 676.4 1453 39.1
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 6.5e-189 666.0 1298 41.6
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.0e-186 658.7 1467 38.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.4e-186 658.3 1313 39.1
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.8e-183 647.9 1540 36.3
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-182 643.3 867 47.4
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 4.0e-178 630.2 1442 36.9
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 2.0e-177 627.9 1430 36.2
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.7e-176 624.8 1446 36.6
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.6e-174 618.2 1300 38.1
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 7.8e-174 615.9 1361 37.2
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.7e-173 614.8 1316 38.1
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 4.6e-166 590.1 1368 36.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 3.0e-165 587.4 693 55.6
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-161 575.1 621 56.2
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 7.5e-161 572.8 668 55.4
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 9.8e-161 572.4 1298 36.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 9.8e-161 572.4 1298 36.8
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.3e-160 572.0 1360 37.1
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.9e-160 570.9 1366 36.7
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-159 567.8 1093 39.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 6.4e-152 543.1 1234 36.8
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 2.7e-134 484.6 807 43.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 3.9e-125 454.1 896 37.7
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.3e-123 449.1 777 40.8
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.1e-119 436.0 1300 33.4
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.2e-118 432.6 410 62.0
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 3.9e-117 427.6 482 50.4
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.1e-103 382.9 538 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 6.1e-102 377.1 721 40.2
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-101 376.3 501 49.7
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.3e-101 375.2 575 42.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.5e-100 372.5 671 41.9
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.4e-98 365.2 656 42.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.1e-95 356.3 497 46.7
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.3e-91 342.8 753 37.5
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.1e-90 339.7 334 56.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-76 292.7 299 55.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.7e-65 255.4 312 59.6
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 4.5e-57 228.0 336 42.9
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.9e-57 227.6 531 34.5
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 4.3e-55 221.5 531 34.3
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.8e-53 216.1 237 52.3
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.9e-51 208.8 521 34.5
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.6e-49 203.0 582 30.8
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 7.8e-49 200.7 275 56.0
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.7e-48 199.5 858 26.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.7e-43 183.0 148 60.1
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 9.2e-42 177.2 495 31.9
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.7e-41 175.6 234 44.4
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.3e-40 173.3 254 45.3
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.3e-35 154.1 707 26.7
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 4.4e-28 131.7 498 27.5
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 5.8e-28 131.3 508 28.1
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.3e-23 115.5 218 37.2
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.3e-23 114.4 121 52.1
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.2e-22 111.3 522 29.3
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-20 104.8 135 58.5
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.5e-15 90.1 644 24.7
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-15 89.0 382 31.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.1e-13 84.0 82 53.7
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.4e-10 73.6 130 42.3
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.4e-10 72.8 68 57.4
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 2.7e-09 69.3 126 50.0
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 4.6e-09 68.6 200 31.5
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 6.0e-09 68.2 124 50.0
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 7.9e-09 67.8 126 49.2


User provided reference genes

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