Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 0.0e+00 1296.6 620 100.0
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 0.0e+00 1136.3 611 87.4
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1125.2 609 86.5
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1124.4 617 84.8
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1119.0 609 85.6
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1108.6 609 85.1
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1107.4 608 85.7
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1106.3 609 84.4
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1104.7 609 84.4
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1103.2 609 84.4
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1103.2 609 84.4
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1102.4 609 84.2
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1091.6 609 83.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1081.2 609 83.1
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 4.2e-312 1074.7 609 82.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.1e-309 1065.1 609 80.6
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 3.5e-309 1064.3 608 82.6
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 7.9e-309 1063.1 609 80.6
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.1e-307 1059.3 612 80.9
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.1e-307 1059.3 609 81.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 5.7e-307 1057.0 612 80.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 4.1e-305 1050.8 571 85.3
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 7.7e-304 1046.6 611 79.9
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.9e-303 1044.6 611 79.7
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 5.0e-303 1043.9 617 79.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 6.1e-301 1036.9 609 78.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.4e-300 1035.8 611 78.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 5.1e-300 1033.9 611 80.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 6.7e-300 1033.5 609 78.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 6.7e-300 1033.5 611 78.9
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.7e-298 1028.9 609 80.3
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.7e-298 1027.7 611 78.4
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.8e-297 1025.4 609 77.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 4.5e-296 1020.8 611 77.3
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.5e-294 1015.0 609 76.0
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 6.1e-293 1010.4 609 77.2
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.7e-287 992.3 612 75.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.1e-286 989.6 611 76.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.8e-284 982.2 609 74.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 8.2e-282 973.4 612 75.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 4.5e-280 967.6 608 75.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.8e-279 964.5 609 73.6
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.3e-274 949.5 581 76.4
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.9e-249 865.9 622 66.4
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.9e-242 842.0 610 63.8
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 6.4e-242 840.9 613 64.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.6e-237 826.2 509 76.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.7e-237 824.7 610 64.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.9e-234 814.7 611 62.5
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 6.4e-234 814.3 610 62.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 6.4e-234 814.3 610 62.8
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.4e-233 813.1 611 62.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.6e-232 809.7 613 62.3
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.3e-230 801.6 543 68.3
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 4.4e-227 791.6 615 61.3
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.2e-219 766.9 612 60.3
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.7e-218 763.1 611 59.6
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 3.3e-190 669.1 382 82.7
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 4.6e-184 648.7 615 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 4.7e-176 622.1 614 49.2
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.0e-170 604.4 621 48.8
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 3.7e-141 506.1 303 78.5
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.1e-127 459.9 718 36.8
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 1.4e-119 434.5 268 75.4
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 9.9e-118 428.3 275 75.6
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.3e-114 417.9 247 77.7
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 3.0e-114 416.8 243 78.6
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.2e-110 404.8 241 77.2
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 2.3e-106 390.6 268 67.9
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 8.7e-106 388.7 268 67.5
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 8.1e-104 382.1 256 69.5
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 2.0e-102 377.5 256 69.1
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 4.4e-102 376.3 252 70.2
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 8.4e-101 372.1 224 77.7
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 6.0e-99 365.9 252 67.9
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 1.2e-91 341.7 255 62.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.2e-75 288.5 257 61.1
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 2.2e-56 224.6 170 62.4
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 8.5e-45 186.0 191 56.0
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 4.0e-42 177.2 106 78.3
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 7.7e-38 162.9 359 33.1
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.0e-37 162.5 361 32.7
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.0e-37 162.5 347 32.9
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.3e-37 162.2 354 33.9
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.9e-37 161.0 347 33.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-36 159.1 366 32.0
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.1e-36 159.1 363 31.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.5e-36 158.7 363 31.4
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.5e-36 158.7 351 32.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-36 158.3 349 32.1
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 2.5e-36 157.9 343 32.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 3.2e-36 157.5 355 32.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 9.5e-36 156.0 355 31.5
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.2e-35 155.6 370 30.0
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.2e-35 155.6 351 32.2
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.2e-35 155.6 337 31.2
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.6e-35 155.2 351 31.3
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.6e-35 155.2 370 32.7
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.6e-35 155.2 340 33.8
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.6e-35 154.1 352 33.0
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 3.6e-35 154.1 353 32.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 6.1e-35 153.3 353 31.4
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 8.0e-35 152.9 356 30.1
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.0e-35 152.9 354 32.2
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.4e-34 152.1 354 30.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.4e-34 152.1 354 30.8
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.4e-34 152.1 353 31.7
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.4e-34 152.1 344 32.0
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.8e-34 151.8 356 28.7
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.3e-34 151.4 353 32.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 3.0e-34 151.0 350 31.1
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 6.8e-34 149.8 356 32.3
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 8.8e-34 149.4 366 32.2
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.2e-33 149.1 353 32.0
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.2e-33 149.1 362 29.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.2e-33 149.1 350 31.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.5e-33 148.7 358 29.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.5e-33 148.7 348 31.3
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.5e-33 148.7 354 31.1
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 3.4e-33 147.5 128 58.6
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 4.4e-33 147.1 362 30.1
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 4.4e-33 147.1 351 30.8
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 5.7e-33 146.7 359 32.9
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.5e-33 146.4 352 32.1
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 7.5e-33 146.4 377 31.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 9.8e-33 146.0 350 32.9
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.3e-32 145.6 352 31.2
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.3e-32 145.6 350 31.7
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.7e-32 145.2 345 32.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.8e-32 144.4 350 32.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 3.7e-32 144.1 376 29.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 4.9e-32 143.7 370 31.4
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 6.3e-32 143.3 352 31.8
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 6.3e-32 143.3 380 31.8
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.3e-32 143.3 351 31.9
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.1e-31 142.5 351 31.6
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.8e-31 141.7 354 32.5
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.8e-31 141.7 356 31.2
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.4e-31 141.4 378 29.6
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 4.1e-31 140.6 324 30.9
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 4.1e-31 140.6 347 31.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 4.1e-31 140.6 352 30.4
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.2e-30 139.0 353 31.4
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 2.0e-30 138.3 348 32.8
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.0e-30 138.3 354 30.2
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.0e-30 138.3 350 31.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 4.5e-30 137.1 336 29.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 5.9e-30 136.7 335 32.2
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 5.9e-30 136.7 306 32.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.0e-29 136.0 351 31.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.0e-29 136.0 370 29.2
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.3e-29 134.8 346 30.9
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.8e-29 134.0 351 30.8
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 5.0e-29 133.7 356 30.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.0e-29 133.7 350 32.0
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 6.6e-29 133.3 389 28.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 8.6e-29 132.9 355 29.3
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.6e-29 132.9 340 31.8
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 7.3e-28 129.8 328 31.7
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 9.5e-28 129.4 379 29.8
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.4e-26 125.6 152 44.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.8e-26 125.2 319 30.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.8e-26 125.2 292 33.6
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.3e-26 124.8 352 29.8
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.0e-26 124.4 302 30.8
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.0e-25 121.7 297 31.6
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.5e-25 119.8 395 28.4
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.3e-24 119.0 218 35.3
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.3e-24 119.0 320 30.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.4e-23 115.5 302 31.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 3.2e-23 114.4 224 33.5
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.2e-22 112.5 333 29.1
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.6e-22 110.5 357 28.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 5.9e-22 110.2 228 32.5
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.3e-21 109.0 279 28.3
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 6.6e-21 106.7 233 34.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 4.3e-20 104.0 226 32.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.8e-17 93.6 232 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.9e-16 91.3 158 37.3
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.7e-16 90.9 242 30.2
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.1e-11 75.1 110 40.0
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.1e-11 75.1 349 25.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.3e-08 65.9 317 24.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.9e-08 64.7 195 25.6
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 7.1e-07 60.1 113 30.1


User provided reference genes

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