Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 2789.2 1548 100.0
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1729.1 1528 66.0
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1668.3 1577 60.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1623.6 1569 57.6
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1604.0 1538 60.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1580.1 1553 58.3
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1554.7 1529 57.5
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1548.1 1569 57.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1539.6 1603 54.6
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1523.5 1538 60.0
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1517.7 1536 60.5
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1510.0 1554 55.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1508.0 1527 58.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1501.9 1540 59.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1482.2 1597 54.9
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1479.5 1570 54.1
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1461.8 1549 54.9
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1456.4 1534 56.0
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1455.3 1529 57.7
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1446.8 1535 56.8
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1442.6 1551 54.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1430.2 1532 55.3
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1408.7 1571 51.9
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1405.2 1634 50.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1404.4 1530 55.2
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1390.6 1554 51.5
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1388.2 1602 54.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1385.5 1553 54.9
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1382.9 1549 56.0
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1378.6 1545 52.1
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1372.1 1588 50.4
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1370.5 1528 52.5
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1367.4 1565 50.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1363.2 1528 52.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1352.0 1806 48.8
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1347.0 1540 56.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1342.4 1530 54.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1336.6 1569 49.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1336.2 1537 53.9
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1331.2 1537 51.0
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1330.5 1537 53.4
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1330.1 1547 53.1
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1327.0 1536 53.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1325.1 1525 52.7
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1321.2 1574 50.4
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1315.8 1547 54.9
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1308.9 1619 47.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1302.3 1541 52.4
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1299.6 1563 48.5
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1295.8 1543 51.3
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1291.6 1335 57.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1272.7 1607 48.0
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1270.0 1528 51.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1260.7 1548 51.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1258.8 1548 52.1
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1255.7 1534 47.9
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1255.0 1535 47.9
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1248.8 1590 48.1
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1226.8 900 71.1
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1225.3 1619 50.0
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1216.8 1533 50.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1187.9 1531 49.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1186.8 1569 47.1
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1186.4 1542 47.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1178.3 1537 49.5
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1172.5 1568 46.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1172.1 1624 48.6
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1166.4 1559 46.9
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 1161.7 1388 53.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1156.4 1534 50.3
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1156.0 1540 45.8
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1151.7 1543 46.0
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 0.0e+00 1151.7 1525 48.3
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 0.0e+00 1149.8 989 61.9
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1149.4 1538 45.3
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1148.3 1534 47.6
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1127.5 1549 46.7
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1124.4 1612 48.9
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1120.1 1560 47.0
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1109.7 987 60.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1087.8 1538 47.6
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.1e-310 1069.7 1536 47.7
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 5.2e-309 1065.1 1543 43.7
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.8e-309 1064.7 1534 47.5
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 8.6e-304 1047.7 1526 43.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.0e-296 1024.2 1586 42.6
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.5e-295 1017.7 1492 47.2
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 7.5e-292 1008.1 741 71.7
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 7.6e-276 954.9 1593 44.1
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 4.9e-275 952.2 1383 43.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.8e-270 936.4 2428 31.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 4.5e-260 902.5 1541 43.0
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 2.3e-240 837.0 777 59.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 7.9e-233 812.0 1321 39.8
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.6e-225 786.6 1519 35.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.8e-211 740.0 1232 43.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 8.8e-200 702.2 985 46.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.3e-194 683.7 534 67.8
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.3e-186 656.8 667 54.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.8e-176 624.8 1518 33.4
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 8.9e-176 622.5 1616 31.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.3e-163 582.0 873 42.4
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.3e-146 523.1 564 53.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.1e-145 521.5 407 69.0
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.0e-143 515.0 1442 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.4e-128 464.9 1560 27.8
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.4e-126 456.4 601 52.9
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.5e-125 453.8 447 65.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 3.6e-108 397.9 1569 27.8
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.0e-107 396.4 521 48.8
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-104 384.8 514 43.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 5.0e-102 377.5 1113 29.6
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 6.5e-102 377.1 302 65.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.1e-96 359.8 305 62.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 9.1e-96 356.7 1331 26.7
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.0e-87 328.9 247 72.9
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.0e-83 316.6 290 53.4
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.0e-79 302.4 426 46.2
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.7e-60 238.0 156 78.8
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.2e-56 223.8 267 47.9
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-54 219.5 945 26.5
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.3e-53 214.2 233 53.6
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-46 193.4 551 28.3
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.3e-46 193.4 152 71.1
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 4.3e-45 188.3 129 77.5
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-44 184.9 719 26.0
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 2.3e-38 166.0 156 59.6
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.3e-38 166.0 393 31.8
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.3e-30 140.2 401 28.4
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.4e-29 134.4 554 26.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 9.6e-29 134.0 100 65.0
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 4.5e-26 125.2 144 48.6
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 6.0e-23 114.8 366 27.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.3e-22 113.6 100 57.0
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.0e-22 112.5 181 39.2
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 5.1e-22 111.7 689 23.2
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 5.3e-19 101.7 75 65.3
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 6.0e-15 88.2 76 64.5
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.7e-13 81.6 101 53.5
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.7e-09 70.1 342 24.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 6.5e-09 68.2 68 50.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.5e-09 67.8 68 50.0
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 8.5e-09 67.8 53 58.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 4.2e-08 65.5 229 27.5
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 2.3e-06 59.7 147 31.3


User provided reference genes

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