Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13871 Davidia involucrata HOM05D003428 ORTHO05D004131 2.6e-61 238.8 147 100.0
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 1.1e-22 110.5 67 79.1
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 1.2e-18 97.1 66 71.2
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 2.8e-18 95.9 75 62.7
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 3.6e-18 95.5 74 62.2
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 3.0e-17 92.4 66 65.2
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 3.0e-17 92.4 74 60.8
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 8.9e-17 90.9 74 62.2
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 1.5e-16 90.1 71 62.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.0e-16 89.7 74 60.8
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.6e-16 89.4 71 62.0
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 2.6e-16 89.4 74 62.2
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 3.4e-16 89.0 71 63.4
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 3.4e-16 89.0 71 63.4
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 3.4e-16 89.0 76 59.2
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 9.8e-16 87.4 67 64.2
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.3e-15 87.0 74 60.8
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 2.8e-15 85.9 76 56.6
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 2.8e-15 85.9 76 56.6
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 2.8e-15 85.9 80 53.8
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 3.7e-15 85.5 76 55.3
HanXRQChr01g0003631 Helianthus annuus HOM05D003428 ORTHO05D004131 3.7e-15 85.5 66 63.6
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 3.7e-15 85.5 83 48.2
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 4.9e-15 85.1 74 58.1
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 4.9e-15 85.1 84 53.6
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 4.9e-15 85.1 74 56.8
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 6.3e-15 84.7 84 56.0
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 6.3e-15 84.7 86 46.5
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 1.1e-14 84.0 72 56.9
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 1.1e-14 84.0 69 59.4
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 1.8e-14 83.2 82 54.9
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 1.8e-14 83.2 88 51.1
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 2.4e-14 82.8 79 55.7
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 3.1e-14 82.4 73 58.9
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 3.1e-14 82.4 85 50.6
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 4.1e-14 82.0 66 59.1
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 5.4e-14 81.6 72 56.9
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 5.4e-14 81.6 81 49.4
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 5.4e-14 81.6 77 53.2
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 7.0e-14 81.3 76 57.9
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 1.2e-13 80.5 79 53.2
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 1.2e-13 80.5 79 53.2
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.2e-13 80.5 74 58.1
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 1.6e-13 80.1 77 55.8
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 1.6e-13 80.1 75 54.7
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 2.0e-13 79.7 74 55.4
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 2.0e-13 79.7 80 52.5
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.0e-13 79.7 74 56.8
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 2.0e-13 79.7 74 54.1
Oeu043543.1 Olea europaea HOM05D003428 ORTHO05D004131 2.0e-13 79.7 83 49.4
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 2.7e-13 79.3 77 55.8
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 2.7e-13 79.3 77 51.9
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 2.7e-13 79.3 77 51.9
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 2.7e-13 79.3 77 51.9
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 4.5e-13 78.6 85 48.2
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 5.9e-13 78.2 87 46.0
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 7.8e-13 77.8 68 57.4
VMungo1383G2631 Vigna mungo HOM05D003428 ORTHO05D004131 7.8e-13 77.8 80 48.8
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 1.0e-12 77.4 78 52.6
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 1.0e-12 77.4 77 50.6
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 1.3e-12 77.0 78 52.6
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 1.3e-12 77.0 78 52.6
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 1.3e-12 77.0 78 52.6
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 1.3e-12 77.0 78 52.6
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 1.3e-12 77.0 82 45.1
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 1.3e-12 77.0 91 40.7
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 1.3e-12 77.0 76 51.3
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 1.3e-12 77.0 71 56.3
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 1.7e-12 76.6 80 53.8
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 1.7e-12 76.6 80 53.8
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 2.9e-12 75.9 94 40.4
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 3.8e-12 75.5 86 51.2
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 1.1e-11 73.9 69 55.1
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 1.1e-11 73.9 85 50.6
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 1.9e-11 73.2 81 50.6
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 1.9e-11 73.2 76 46.1
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 2.5e-11 72.8 67 50.7
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 2.5e-11 72.8 72 50.0
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 2.5e-11 72.8 76 44.7
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 4.3e-11 72.0 54 63.0
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 1.2e-10 70.5 53 62.3
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 2.1e-10 69.7 76 51.3
MSTRG.13151 Avicennia marina HOM05D003428 ORTHO05D004131 2.8e-10 69.3 73 46.6
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 3.6e-10 68.9 33 87.9
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 3.6e-10 68.9 33 87.9
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 3.6e-10 68.9 77 48.1
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 3.6e-10 68.9 76 46.1
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 1.0e-09 67.4 66 51.5
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 1.0e-09 67.4 77 48.1
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 1.8e-09 66.6 33 81.8
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 2.3e-09 66.2 66 53.0
QL10p056553 Quercus lobata HOM05D003428 ORTHO05D004131 2.3e-09 66.2 75 45.3
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 5.2e-09 65.1 82 40.2
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 6.8e-09 64.7 36 75.0
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 6.8e-09 64.7 65 52.3
Lj2C596T4 Lonicera japonica HOM05D003428 ORTHO05D004131 2.0e-08 63.2 56 57.1
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 3.4e-08 62.4 67 47.8
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.4e-08 62.0 69 46.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 5.8e-08 61.6 79 41.8
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 2.2e-07 59.7 91 41.8
SEGI_09197 Sequoiadendron giganteum HOM05D003428 ORTHO05D004131 2.2e-07 59.7 67 46.3
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 3.7e-07 58.9 84 40.5
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 4.9e-07 58.5 36 75.0
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 6.4e-07 58.2 34 70.6
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 8.3e-07 57.8 66 43.9
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 3.2e-06 55.8 34 67.6
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.1e-06 55.5 66 42.4
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 4.1e-06 55.5 66 45.5
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 7.0e-06 54.7 86 43.0


User provided reference genes

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