Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 0.0e+00 1305.4 657 100.0
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 5.6e-289 997.3 658 76.6
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.9e-254 880.9 677 67.9
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.4e-250 869.8 660 68.0
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 4.8e-248 861.3 661 66.4
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 6.5e-245 850.9 662 65.7
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 7.0e-239 830.9 656 66.3
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.5e-238 828.6 665 63.9
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.7e-237 826.2 660 64.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.2e-233 813.5 670 64.0
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 2.2e-232 809.3 662 63.3
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 8.0e-227 790.8 656 61.9
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.6e-225 785.8 656 61.9
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.3e-224 783.5 661 62.2
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.4e-223 779.2 664 60.7
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.0e-221 772.3 660 61.1
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.1e-219 766.1 492 76.2
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 6.2e-219 764.6 656 60.7
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 4.0e-218 761.9 709 58.5
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.2e-214 750.4 592 64.2
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 4.6e-214 748.4 665 59.4
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 6.0e-214 748.0 648 59.9
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.3e-213 746.1 643 60.2
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.3e-212 742.3 645 60.0
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.8e-211 739.2 665 59.5
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 4.7e-211 738.4 695 57.8
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 2.0e-209 733.0 663 57.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.9e-208 729.2 656 59.6
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 9.2e-207 724.2 468 77.6
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.6e-206 723.4 665 57.4
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.1e-205 718.4 662 57.4
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 5.1e-205 718.4 752 53.5
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 6.6e-205 718.0 648 59.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 6.6e-205 718.0 662 56.8
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.5e-204 716.8 662 56.6
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 8.9e-202 707.6 650 57.2
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 4.4e-201 705.3 781 51.3
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 3.2e-199 699.1 661 55.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 5.4e-199 698.4 662 56.3
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 7.1e-199 698.0 662 54.8
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.2e-198 697.2 662 55.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 6.0e-198 694.9 599 60.3
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 5.1e-197 691.8 671 56.0
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 7.3e-196 688.0 661 55.4
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.8e-195 686.0 661 54.0
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 3.6e-195 685.6 667 54.4
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 5.2e-194 681.8 666 53.8
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.2e-194 681.8 641 56.3
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 5.8e-193 678.3 683 54.9
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 3.2e-191 672.5 674 53.3
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 4.2e-191 672.2 675 53.3
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 9.3e-191 671.0 672 55.4
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.6e-190 670.2 594 60.1
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 3.5e-190 669.1 671 53.2
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 4.6e-190 668.7 668 53.9
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 5.1e-189 665.2 670 53.4
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 5.1e-189 665.2 657 57.5
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 5.1e-189 665.2 667 55.0
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.3e-187 660.6 657 55.1
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 2.8e-187 659.4 668 52.2
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.4e-186 657.1 671 52.5
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.4e-186 656.4 596 58.2
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 5.8e-185 651.7 599 57.6
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 9.9e-185 651.0 674 52.4
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 7.9e-182 641.3 665 52.6
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 2.5e-180 636.3 513 62.8
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 4.6e-174 615.5 531 61.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 6.7e-173 611.7 460 67.6
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.5e-172 609.8 491 61.9
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 3.3e-172 609.4 665 51.4
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 5.8e-169 598.6 667 49.5
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 6.7e-165 585.1 425 68.9
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 5.7e-164 582.0 662 49.5
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 3.2e-159 566.2 678 47.9
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.7e-155 553.9 565 51.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 3.9e-149 532.7 710 46.2
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 4.1e-146 522.7 719 44.1
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.2e-145 521.2 686 46.8
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.6e-142 509.6 595 47.6
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.0e-140 503.8 705 43.0
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.3e-139 501.1 670 44.6
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 6.7e-133 478.8 724 41.7
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.7e-131 474.2 491 50.7
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.3e-125 453.8 688 42.4
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.1e-119 434.9 802 38.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.8e-114 417.5 262 79.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.2e-113 414.8 650 42.0
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 9.5e-111 405.2 576 46.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.6e-110 404.4 576 46.2
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 6.8e-109 399.1 372 57.8
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.0e-104 383.6 708 38.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 3.2e-98 363.6 452 44.7
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 3.6e-86 323.6 476 44.3
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 3.9e-80 303.5 262 59.5
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.9e-80 303.5 265 59.6
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.3e-67 261.9 502 33.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.4e-61 241.1 383 42.3
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.9e-59 234.2 395 38.2
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 2.7e-57 227.6 394 38.3
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 3.9e-48 197.2 197 52.8
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 2.4e-45 188.0 197 54.8
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 3.6e-41 174.1 201 48.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.2e-38 164.9 167 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.2e-36 159.1 251 34.3
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 2.5e-34 151.4 132 64.4
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.5e-34 150.2 485 28.5
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 4.7e-33 147.1 172 45.3
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 3.2e-26 124.4 171 43.3
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 7.2e-26 123.2 512 24.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-24 118.2 114 50.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.0e-19 102.8 170 37.1
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 7.2e-18 96.7 141 47.5
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 2.1e-17 95.1 84 53.6
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 7.5e-15 86.7 96 45.8
Peaxi162Scf00677g00035 Petunia axillaris HOM05D000800 ORTHO05D000658 7.5e-07 60.1 144 34.0
SEGI_40191 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 9.8e-07 59.7 52 51.9


User provided reference genes

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