Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 3.2e-116 422.2 280 100.0
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.9e-84 316.6 256 65.2
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.9e-84 316.6 256 65.2
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.1e-81 307.4 255 63.5
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 7.0e-79 298.1 247 62.8
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.3e-77 293.9 247 61.9
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.4e-74 283.9 249 59.4
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 2.3e-74 283.1 259 59.5
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 3.0e-74 282.7 256 59.8
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 1.7e-72 276.9 251 58.6
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 1.1e-71 274.2 251 57.8
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 5.3e-71 271.9 245 57.6
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 5.3e-71 271.9 249 57.8
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 9.1e-71 271.2 249 57.8
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 1.2e-70 270.8 248 58.1
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 2.6e-70 269.6 247 57.5
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 5.9e-70 268.5 248 57.7
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 1.0e-69 267.7 254 55.9
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 3.8e-69 265.8 254 55.9
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 1.5e-68 263.8 251 56.2
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 1.5e-68 263.8 247 56.7
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 2.5e-68 263.1 258 56.6
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 3.2e-68 262.7 248 56.0
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 1.2e-67 260.8 258 55.8
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 2.7e-67 259.6 258 56.6
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 3.6e-67 259.2 232 59.1
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 6.1e-67 258.5 248 55.6
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 6.1e-67 258.5 246 54.9
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 2.3e-66 256.5 248 54.0
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 6.8e-66 255.0 171 78.4
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 6.8e-66 255.0 249 53.8
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 6.8e-66 255.0 249 54.6
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 2.6e-65 253.1 240 56.2
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 4.4e-65 252.3 249 55.8
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 4.4e-65 252.3 254 53.5
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 7.5e-65 251.5 258 55.4
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 9.8e-65 251.1 251 55.4
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 9.8e-65 251.1 251 55.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 9.8e-65 251.1 258 53.1
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 1.3e-64 250.8 258 54.7
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 2.8e-64 249.6 254 52.0
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 6.3e-64 248.4 252 53.6
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 1.1e-63 247.7 232 57.8
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 1.4e-63 247.3 249 54.6
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 1.8e-63 246.9 246 54.5
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 2.4e-63 246.5 254 52.4
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 1.2e-62 244.2 246 53.3
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.6e-62 243.8 140 85.0
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 2.0e-62 243.4 254 54.3
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 4.5e-62 242.3 242 52.5
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 5.9e-62 241.9 242 53.7
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 1.3e-61 240.7 293 49.5
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 1.3e-61 240.7 255 52.9
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 1.7e-61 240.4 255 51.8
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 3.8e-61 239.2 259 49.4
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 5.0e-61 238.8 257 52.5
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 5.0e-61 238.8 257 52.5
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 5.0e-61 238.8 253 51.4
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 8.5e-61 238.0 250 52.8
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 8.5e-61 238.0 250 52.8
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 5.5e-60 235.3 233 54.1
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 7.2e-60 235.0 254 50.4
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 9.4e-60 234.6 254 50.8
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 9.4e-60 234.6 246 50.4
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 9.4e-60 234.6 250 50.0
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 1.2e-59 234.2 247 49.8
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 4.7e-59 232.3 254 50.0
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 6.1e-59 231.9 325 44.6
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 8.0e-59 231.5 250 52.0
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 5.2e-58 228.8 250 50.4
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 5.2e-58 228.8 257 47.1
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 4.4e-57 225.7 254 51.6
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 5.7e-57 225.3 241 56.4
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 7.5e-57 224.9 262 47.7
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 1.7e-56 223.8 250 49.6
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 4.9e-56 222.2 246 50.4
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.1e-55 221.1 246 50.4
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 5.4e-55 218.8 244 48.0
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 7.0e-55 218.4 246 50.4
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.2e-54 217.6 246 49.2
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 2.0e-54 216.9 248 50.4
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 4.5e-54 215.7 246 49.2
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 4.5e-54 215.7 254 48.4
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 4.5e-54 215.7 254 48.4
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 5.9e-54 215.3 139 79.1
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 5.9e-54 215.3 253 48.2
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 7.7e-54 214.9 254 48.4
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 1.0e-53 214.5 237 48.9
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.0e-53 214.5 254 48.0
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 1.0e-53 214.5 254 48.4
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.0e-53 214.5 237 48.9
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 1.3e-53 214.2 148 73.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.3e-53 213.4 253 47.4
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 2.9e-53 213.0 253 47.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.9e-53 213.0 253 47.4
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 2.9e-53 213.0 246 48.8
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 6.6e-53 211.8 237 49.8
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 1.9e-52 210.3 197 56.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.5e-52 209.9 246 47.6
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.5e-52 209.9 246 47.6
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 7.2e-52 208.4 230 48.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 6.8e-50 201.8 244 49.2
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 9.8e-49 198.0 141 70.2
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 1.7e-48 197.2 254 47.6
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 1.8e-47 193.7 147 62.6
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 4.1e-47 192.6 238 46.2
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 4.1e-47 192.6 143 65.7
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.7e-46 189.9 258 46.9
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.5e-46 189.5 249 45.0
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 3.5e-46 189.5 254 46.5
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.0e-45 188.0 250 47.6
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 5.0e-45 185.7 196 52.0
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 1.5e-44 184.1 237 42.6
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 2.8e-43 179.9 258 44.6
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 3.1e-42 176.4 131 64.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.0e-38 163.7 249 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 1.0e-37 161.4 232 39.2
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.1e-35 153.7 113 66.4
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 3.7e-32 142.9 223 38.6
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 1.2e-30 137.9 163 47.2
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 1.0e-29 134.8 230 32.6
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.6e-22 110.9 124 45.2
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 6.4e-16 89.0 121 43.0
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 5.4e-15 85.9 100 48.0
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 5.8e-09 65.9 42 66.7
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.2e-07 60.1 48 58.3
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 2.1e-06 57.4 45 55.6


User provided reference genes

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