Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 7.1e-90 334.0 174 100.0
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.3e-75 286.6 175 86.3
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.5e-74 282.3 175 84.6
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 7.1e-74 280.8 175 84.6
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 9.3e-74 280.4 173 82.1
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.1e-73 279.3 168 81.5
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.3e-72 276.6 174 79.9
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.8e-72 276.2 175 84.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.3e-72 275.8 166 83.7
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 3.9e-72 275.0 170 80.6
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.5e-71 272.3 172 80.8
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.2e-70 269.2 164 78.0
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 4.8e-70 268.1 170 79.4
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 6.3e-70 267.7 167 81.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 8.2e-70 267.3 178 77.0
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 8.2e-70 267.3 175 78.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.4e-69 266.5 167 80.8
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 2.4e-69 265.8 171 77.2
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 4.1e-69 265.0 170 78.2
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 5.3e-69 264.6 168 79.8
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 1.5e-68 263.1 167 79.0
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.5e-68 263.1 161 81.4
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.0e-68 262.7 170 77.1
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.0e-68 262.7 167 77.8
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.0e-68 262.7 167 79.6
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.0e-68 262.7 169 79.3
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 2.0e-68 262.7 172 76.7
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.0e-67 260.4 161 78.3
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 1.0e-67 260.4 164 76.8
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.0e-67 260.4 167 78.4
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.0e-67 260.4 169 77.5
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.3e-67 260.0 175 76.6
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 1.3e-67 260.0 176 73.3
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 2.2e-67 259.2 161 80.1
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.9e-67 258.8 161 77.6
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 3.8e-67 258.5 166 77.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 5.0e-67 258.1 165 77.6
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 6.5e-67 257.7 164 76.8
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 8.5e-67 257.3 164 75.6
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 8.5e-67 257.3 169 76.3
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.4e-66 256.5 160 76.2
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.9e-66 256.1 160 77.5
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.5e-66 255.8 169 78.1
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 3.2e-66 255.4 160 75.6
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 3.2e-66 255.4 164 76.8
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 5.5e-66 254.6 159 76.1
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 5.5e-66 254.6 172 75.0
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 5.5e-66 254.6 172 74.4
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 7.2e-66 254.2 161 78.9
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 7.2e-66 254.2 168 75.6
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 7.2e-66 254.2 164 75.6
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-65 253.4 164 76.8
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.2e-65 253.4 161 77.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 1.6e-65 253.1 169 75.1
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 2.1e-65 252.7 154 79.9
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.1e-65 252.7 164 76.2
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.7e-65 252.3 158 77.8
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.6e-65 251.9 161 75.2
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 6.1e-65 251.1 173 74.0
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 1.0e-64 250.4 161 74.5
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.0e-64 250.4 160 76.2
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.8e-64 249.6 164 73.8
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-64 249.6 161 73.9
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.8e-64 249.6 161 73.9
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.8e-64 249.6 160 75.6
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 2.3e-64 249.2 161 75.8
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 2.3e-64 249.2 169 73.4
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.0e-64 248.8 155 78.1
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 3.0e-64 248.8 162 75.3
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 8.7e-64 247.3 163 77.3
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 1.1e-63 246.9 161 73.9
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.1e-63 246.9 161 75.2
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 2.5e-63 245.7 161 73.3
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 3.3e-63 245.4 167 73.1
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 9.7e-63 243.8 168 73.8
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 9.7e-63 243.8 174 73.0
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.3e-62 243.4 167 71.3
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.3e-62 243.4 154 77.3
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.7e-62 243.0 170 77.6
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.8e-61 239.6 162 72.2
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 3.1e-61 238.8 161 72.0
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 6.9e-61 237.7 139 87.1
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.7e-59 233.0 163 72.4
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.7e-59 233.0 152 73.0
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 2.9e-59 232.3 154 74.7
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 5.0e-59 231.5 197 60.9
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 6.5e-59 231.1 171 67.3
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.5e-58 229.2 172 70.3
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 2.5e-58 229.2 165 70.3
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 9.4e-58 227.3 150 74.7
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.6e-57 226.5 202 61.9
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.1e-57 226.1 161 68.9
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.7e-57 225.7 162 68.5
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 2.7e-57 225.7 165 70.3
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 2.7e-57 225.7 155 74.2
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 4.7e-57 224.9 148 73.6
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 4.7e-57 224.9 217 58.5
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 6.1e-57 224.6 165 70.3
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 7.9e-57 224.2 165 67.9
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 7.9e-57 224.2 162 71.0
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.4e-56 223.4 172 68.6
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 5.1e-56 221.5 159 69.2
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 5.1e-56 221.5 160 66.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 6.7e-56 221.1 158 67.1
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 1.1e-55 220.3 158 70.3
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.5e-55 219.9 165 67.9
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.6e-55 219.2 155 71.0
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 3.3e-55 218.8 155 71.6
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 5.7e-55 218.0 158 67.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.7e-54 216.5 161 70.2
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.2e-54 214.2 157 67.5
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.8e-53 213.0 165 65.5
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.2e-52 210.3 165 64.8
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.0e-52 209.5 165 62.4
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 5.9e-52 208.0 158 68.4
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.7e-52 207.6 172 65.7
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.0e-51 207.2 188 58.5
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 8.0e-49 197.6 130 73.1
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.0e-48 197.2 154 64.9
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-48 196.4 162 62.3
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 3.0e-48 195.7 170 60.6
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.9e-48 195.3 153 64.1
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 2.0e-47 193.0 130 70.8
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.4e-47 191.8 117 87.2
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.7e-46 189.9 119 74.8
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 9.1e-45 184.1 132 65.9
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 2.0e-44 183.0 143 70.6
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 3.5e-44 182.2 105 88.6
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 3.6e-41 172.2 157 57.3
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 6.1e-41 171.4 167 54.5
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 6.1e-41 171.4 170 54.7
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 8.0e-41 171.0 107 74.8
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 1.2e-39 167.2 112 75.0
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 7.0e-37 157.9 162 53.1
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 9.1e-37 157.5 106 69.8
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 4.5e-36 155.2 158 55.1
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 1.7e-35 153.3 107 68.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.2e-35 152.9 163 49.1
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.6e-33 146.7 94 85.1
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 2.3e-32 142.9 99 72.7
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 4.0e-32 142.1 91 79.1
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 5.4e-29 131.7 113 62.8
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.5e-26 121.7 79 70.9
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.2e-23 114.0 87 66.7
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 6.3e-22 108.2 167 36.5
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 5.4e-21 105.1 88 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 7.8e-20 101.3 66 77.3
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 3.8e-19 99.0 122 50.8
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-18 95.1 59 79.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-18 95.1 59 79.7
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 6.1e-17 91.7 59 72.9
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 8.9e-16 87.8 152 36.8
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-15 87.4 54 75.9
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-15 87.4 54 83.3
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.4e-13 80.5 52 73.1
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 3.2e-13 79.3 45 84.4
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 7.0e-13 78.2 195 26.7
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.1e-10 70.9 48 70.8
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.1e-10 70.9 151 32.5


User provided reference genes

Program Settings