Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 9.1e-131 470.3 248 100.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.9e-112 409.5 236 91.5
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.8e-102 374.4 244 80.3
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.5e-98 362.1 247 78.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 8.6e-97 357.5 248 76.6
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.0e-90 336.3 234 76.1
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.0e-89 334.0 246 71.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 5.6e-88 328.2 246 71.5
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.1e-87 326.2 242 72.7
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 3.6e-87 325.5 246 73.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 4.0e-86 322.0 237 72.2
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 5.2e-86 321.6 246 68.3
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 3.4e-85 318.9 204 80.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.3e-84 317.0 246 69.5
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.7e-84 316.6 233 73.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.4e-83 313.5 247 68.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-83 313.5 235 73.6
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.9e-83 313.2 235 71.1
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.4e-83 311.6 246 67.5
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-82 310.5 249 68.3
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.6e-82 310.1 243 70.4
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.3e-81 307.0 238 70.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.9e-81 305.4 249 66.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 5.0e-81 305.1 247 68.4
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 6.6e-81 304.7 234 70.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.5e-80 303.5 235 68.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.3e-80 302.4 237 67.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.3e-80 302.4 214 77.1
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 7.3e-80 301.2 214 76.6
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 9.5e-80 300.8 204 76.5
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 9.5e-80 300.8 248 69.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.2e-79 300.4 249 67.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-79 300.4 243 68.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-79 300.4 263 63.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.6e-79 300.1 239 65.3
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.8e-79 299.3 233 70.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.2e-79 298.1 243 65.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 6.2e-79 298.1 247 66.0
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 8.0e-79 297.7 239 69.9
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.4e-78 297.0 239 68.2
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.4e-78 297.0 247 66.0
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.8e-78 296.6 246 64.2
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.3e-78 296.2 243 68.3
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 4.0e-78 295.4 248 63.7
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.2e-78 295.0 235 68.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.2e-78 295.0 236 65.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 6.8e-78 294.7 247 66.4
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.8e-78 294.7 247 66.4
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.8e-78 294.7 241 66.0
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 8.9e-78 294.3 248 66.1
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-77 293.9 241 65.6
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.2e-77 293.9 241 65.6
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.2e-77 293.9 248 66.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.5e-77 293.5 238 67.2
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-77 293.5 247 66.4
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.0e-77 293.1 242 64.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.6e-77 292.7 247 65.2
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.4e-77 292.4 241 66.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.4e-77 292.0 238 66.0
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.8e-77 291.6 237 67.5
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.8e-77 291.6 237 67.9
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.3e-76 290.4 238 65.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.7e-76 290.0 246 63.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.7e-76 290.0 240 68.3
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.7e-76 290.0 212 72.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.9e-76 289.3 195 75.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 6.4e-76 288.1 243 65.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-75 287.3 234 66.2
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.2e-75 285.8 244 62.7
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 9.2e-75 284.3 238 64.7
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.2e-75 284.3 204 72.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.2e-74 283.9 233 65.2
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.6e-74 283.5 244 62.7
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.7e-74 282.7 242 63.6
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-74 282.3 242 63.6
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-73 280.8 241 64.3
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 3.9e-73 278.9 195 74.9
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.9e-73 278.9 257 64.6
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.9e-72 276.6 244 63.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 5.6e-72 275.0 246 63.0
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 5.6e-72 275.0 246 63.0
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 7.3e-72 274.6 203 70.9
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 9.5e-72 274.2 249 63.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-71 273.9 249 63.5
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.2e-71 273.9 212 70.3
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.6e-71 273.5 247 61.5
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.6e-71 272.3 238 64.7
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 4.7e-71 271.9 239 63.6
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 8.1e-71 271.2 239 64.0
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.2e-70 268.5 246 63.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.2e-69 267.3 242 62.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.5e-69 266.9 201 69.2
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 5.8e-69 265.0 206 69.4
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 7.5e-69 264.6 258 62.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 9.9e-69 264.2 249 60.6
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 9.9e-69 264.2 197 72.1
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.2e-68 263.1 237 64.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.1e-67 260.8 194 71.1
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 7.1e-67 258.1 250 60.4
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.3e-65 253.8 237 60.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.1e-65 251.9 201 71.1
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.3e-64 248.8 244 61.5
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 9.5e-64 247.7 236 61.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.2e-63 247.3 235 60.9
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.8e-63 246.1 256 58.6
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.2e-63 245.0 250 56.0
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.2e-63 245.0 201 66.2
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.4e-62 243.0 209 63.6
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-62 242.7 209 63.2
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.2e-62 241.9 244 59.8
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.8e-62 241.5 245 54.7
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.8e-62 241.5 201 65.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.4e-61 239.2 201 65.2
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.9e-61 237.7 231 56.7
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.7e-60 236.9 232 56.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.2e-59 232.6 261 54.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 4.2e-59 232.3 187 66.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.0e-57 227.6 172 69.2
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.0e-57 227.6 257 53.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.3e-57 227.3 228 55.7
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 6.6e-57 224.9 261 51.0
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 6.6e-57 224.9 227 57.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 8.7e-57 224.6 172 68.6
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 8.7e-57 224.6 172 68.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 8.7e-57 224.6 172 68.6
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 8.7e-57 224.6 227 55.5
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 9.6e-56 221.1 198 60.1
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 6.2e-55 218.4 224 55.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.1e-54 217.6 176 67.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.5e-53 213.8 202 58.4
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-51 207.2 148 73.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.4e-46 189.9 196 56.1
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.2e-45 187.6 171 63.2
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.5e-45 187.2 128 76.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.1e-43 181.0 212 49.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.9e-43 180.3 227 46.7
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.2e-43 179.5 188 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.0e-41 174.5 196 50.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.7e-41 171.8 186 52.7
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.7e-39 166.0 151 57.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 6.9e-38 161.8 187 50.3
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-36 157.5 115 72.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.3e-36 157.5 197 47.7
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.9e-35 153.7 114 70.2
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.6e-34 150.6 97 81.4
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.6e-34 149.1 96 84.4
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.0e-33 146.4 190 48.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.7e-33 145.2 222 44.1
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-28 130.2 200 41.0
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 4.9e-28 129.0 129 57.4
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.2e-23 111.7 93 58.1
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 2.3e-17 93.6 82 58.5
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 5.1e-17 92.4 82 58.5
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 5.1e-17 92.4 111 51.4
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 8.2e-15 85.1 115 45.2
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-12 77.0 153 43.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.3e-08 63.2 129 39.5
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 7.4e-08 62.0 63 58.7
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 2.8e-07 60.1 83 43.4
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 4.1e-06 56.2 115 33.0


User provided reference genes

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