Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.4e-68 261.5 131 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 6.0e-41 171.0 93 91.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 8.7e-40 167.2 93 87.1
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.9e-39 166.0 93 90.3
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.9e-39 166.0 93 90.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 7.3e-39 164.1 92 87.0
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.8e-38 162.2 93 88.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 6.2e-38 161.0 93 90.3
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.4e-37 159.1 92 90.2
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.4e-37 159.1 92 90.2
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 4.0e-37 158.3 92 84.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.3e-37 157.9 93 83.9
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 5.3e-37 157.9 94 83.0
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 5.3e-37 157.9 95 82.1
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 5.3e-37 157.9 92 82.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 9.0e-37 157.1 93 82.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.0e-37 157.1 92 85.9
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.5e-36 156.4 92 83.7
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-36 156.0 94 81.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.8e-36 154.5 94 84.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.8e-36 154.5 92 82.6
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.8e-36 154.5 93 79.6
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 5.8e-36 154.5 92 84.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 5.8e-36 154.5 93 80.6
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 7.6e-36 154.1 94 86.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 7.6e-36 154.1 93 78.5
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 7.6e-36 154.1 93 78.5
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 7.6e-36 154.1 93 78.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 9.9e-36 153.7 93 81.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 9.9e-36 153.7 96 80.2
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 9.9e-36 153.7 95 81.1
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.9e-36 153.7 94 85.1
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.9e-36 153.7 94 85.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.3e-35 153.3 90 85.6
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.3e-35 153.3 92 79.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.3e-35 153.3 92 81.5
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-35 153.3 92 81.5
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.7e-35 152.9 94 83.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.7e-35 152.9 93 83.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-35 152.5 94 84.0
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.2e-35 152.5 94 81.9
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.9e-35 152.1 94 78.7
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.9e-35 152.1 92 79.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.8e-35 151.8 93 78.5
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 4.9e-35 151.4 94 81.9
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 4.9e-35 151.4 94 81.9
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.9e-35 151.4 92 81.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 8.4e-35 150.6 107 73.8
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.4e-35 150.6 92 80.4
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 8.4e-35 150.6 93 80.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 8.4e-35 150.6 94 81.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.4e-34 149.8 93 79.6
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.9e-34 149.4 93 78.5
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.9e-34 149.4 94 80.9
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.9e-34 149.4 93 78.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.9e-34 149.4 94 79.8
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.4e-34 149.1 93 79.6
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.4e-34 149.1 92 81.5
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.4e-34 149.1 93 75.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.2e-34 148.7 92 78.3
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.2e-34 148.7 92 81.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.2e-34 148.7 93 75.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.2e-34 148.3 92 82.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.2e-34 148.3 94 78.7
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.2e-34 148.3 94 78.7
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.4e-34 147.9 93 77.4
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 5.4e-34 147.9 93 78.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 7.1e-34 147.5 92 79.3
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.1e-34 147.5 93 79.6
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 7.1e-34 147.5 92 77.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.1e-34 147.5 92 76.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.3e-34 147.1 92 76.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 9.3e-34 147.1 92 78.3
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 9.3e-34 147.1 92 80.4
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 9.3e-34 147.1 92 80.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.6e-33 146.4 92 81.5
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.1e-33 146.0 94 78.7
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 2.1e-33 146.0 93 75.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.7e-33 145.6 95 81.1
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-33 145.2 93 80.6
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-33 145.2 93 80.6
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-33 145.2 93 80.6
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-33 145.2 93 80.6
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.6e-33 144.8 92 80.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.0e-33 144.4 92 77.2
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 7.9e-33 144.1 93 73.1
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.0e-32 143.7 92 76.1
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.0e-32 143.7 92 76.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-32 143.7 93 79.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-32 142.9 102 70.6
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.7e-32 142.9 92 77.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.3e-32 142.5 97 76.3
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.3e-32 142.5 95 75.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 3.0e-32 142.1 92 75.0
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 5.1e-32 141.4 92 75.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 5.1e-32 141.4 92 75.0
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.1e-32 141.4 92 77.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 5.1e-32 141.4 90 78.9
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 6.6e-32 141.0 92 75.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.6e-32 141.0 92 73.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 6.6e-32 141.0 92 75.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 6.6e-32 141.0 97 74.2
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 6.6e-32 141.0 92 75.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 6.6e-32 141.0 92 79.3
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 8.7e-32 140.6 91 74.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.1e-31 140.2 102 69.6
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.1e-31 140.2 92 80.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-31 139.8 92 70.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.9e-31 139.4 92 73.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.9e-31 139.4 92 73.9
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.9e-31 139.4 92 73.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.5e-31 139.0 92 73.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.3e-31 138.7 93 73.1
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 3.3e-31 138.7 104 68.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.3e-31 138.7 92 78.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 3.3e-31 138.7 95 73.7
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 4.3e-31 138.3 93 76.3
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 7.4e-31 137.5 92 72.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 7.4e-31 137.5 92 77.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 7.4e-31 137.5 92 71.7
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.6e-30 136.3 95 71.6
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.1e-30 136.0 92 72.8
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-30 135.6 109 68.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-30 135.6 109 68.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-29 132.9 92 71.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.8e-29 132.9 104 67.3
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-29 132.9 109 67.0
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.4e-29 132.5 95 73.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.4e-29 132.5 95 73.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.4e-29 132.5 95 71.6
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.2e-28 130.2 92 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.5e-28 129.8 92 66.3
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.5e-28 129.8 91 68.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 4.5e-28 128.3 93 66.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.3e-27 126.7 91 68.1
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.4e-26 123.2 93 64.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.9e-26 122.9 89 67.4
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.5e-25 118.6 89 66.3
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.6e-25 118.2 86 70.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 4.6e-25 118.2 95 68.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.5e-20 103.2 94 66.0
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.8e-20 101.3 58 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.3e-19 100.1 93 52.7
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 6.5e-19 97.8 92 55.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 4.6e-17 91.7 54 79.6
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-17 90.9 54 77.8
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-16 90.5 50 88.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.3e-14 83.6 85 55.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.7e-14 82.0 47 76.6
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.1e-13 79.0 114 45.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 9.0e-13 77.4 48 75.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.6e-12 75.9 46 73.9
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 5.0e-11 71.6 96 37.5
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.2e-10 68.9 34 91.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.9e-07 59.7 93 35.5
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.3e-06 57.0 44 65.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.3e-06 57.0 45 71.1


User provided reference genes

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