Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 0.0e+00 1203.7 633 100.0
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 8.8e-223 777.3 560 78.4
Dinv07183 Davidia involucrata HOM05D007604 ORTHO05D045112 2.0e-94 350.9 204 89.7
Dinv01769 Davidia involucrata HOM05D007604 ORTHO05D008966 1.3e-85 321.6 172 94.8
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.4e-73 280.4 753 35.3
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.1e-50 204.1 727 30.0
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 6.9e-50 203.0 545 32.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 4.6e-46 190.3 693 28.6
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.1e-44 185.7 665 29.8
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 6.2e-43 179.9 495 32.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.2e-40 171.4 518 32.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.8e-40 170.6 494 31.8
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.9e-37 160.6 375 33.3
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 9.7e-36 156.0 491 33.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.1e-34 152.5 623 27.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.4e-34 152.1 697 27.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.4e-34 151.4 679 27.5
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.5e-33 148.7 642 29.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.5e-33 148.7 652 27.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-33 148.7 391 32.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 4.5e-33 147.1 391 32.2
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 5.9e-33 146.7 510 27.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.7e-32 145.2 660 26.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 6.5e-32 143.3 620 28.9
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.2e-31 141.0 246 38.2
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.2e-31 140.6 247 38.5
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 9.3e-31 139.4 623 28.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-30 138.7 245 37.6
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-30 138.7 245 37.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.6e-30 137.5 225 39.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.3e-29 135.6 211 38.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.7e-29 133.3 690 27.1
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.7e-29 133.3 226 36.3
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.7e-29 133.3 416 31.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 8.7e-29 132.9 577 28.2
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.1e-28 132.5 579 29.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-28 132.5 215 40.9
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-28 132.1 274 35.8
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-28 132.1 280 36.1
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.5e-28 131.3 679 25.5
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.3e-28 130.6 276 36.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 9.7e-28 129.4 301 33.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.3e-27 129.0 231 36.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.3e-27 129.0 669 27.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.6e-27 128.6 590 26.8
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.8e-27 127.9 497 27.0
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.8e-27 127.1 653 27.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 6.3e-27 126.7 194 41.8
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 8.2e-27 126.3 675 25.6
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 4.1e-26 124.0 519 28.5
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 9.1e-26 122.9 658 27.4
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.6e-25 121.3 183 39.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.0e-24 119.4 519 27.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.2e-24 118.2 642 27.7
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.9e-24 117.9 294 31.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 3.8e-24 117.5 193 39.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 6.5e-24 116.7 199 36.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 8.5e-24 116.3 411 29.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.4e-23 115.5 613 26.6
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.9e-23 115.2 466 29.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.9e-23 115.2 185 38.9
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.2e-23 114.0 184 37.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 5.5e-23 113.6 208 37.0
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 5.5e-23 113.6 297 31.3
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 7.2e-23 113.2 197 38.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 7.2e-23 113.2 194 35.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-22 112.1 405 29.4
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.7e-22 111.3 212 38.2
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.6e-22 110.9 615 25.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.6e-22 110.9 173 39.3
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.4e-21 109.0 612 25.0
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.4e-21 109.0 403 29.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.0e-21 107.8 632 26.3
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 6.7e-21 106.7 222 35.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 8.8e-21 106.3 666 23.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.4e-20 104.0 175 36.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 5.7e-20 103.6 174 39.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 9.7e-20 102.8 171 39.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.2e-19 101.7 513 26.9
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.8e-19 101.3 615 25.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-18 99.4 179 34.1
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.1e-18 99.4 179 34.1
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.8e-18 98.6 214 33.6
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.4e-18 98.2 397 26.4
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.1e-18 97.8 177 35.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.1e-18 97.8 176 36.4
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 9.1e-18 96.3 180 34.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 9.1e-18 96.3 180 34.4
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 9.1e-18 96.3 634 25.6
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.6e-17 94.7 224 33.9
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.6e-17 94.7 216 32.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 4.5e-17 94.0 172 35.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.5e-17 94.0 183 33.3
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 5.9e-17 93.6 172 35.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 7.7e-17 93.2 174 36.2
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 7.7e-17 93.2 186 32.3
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.0e-16 92.8 394 25.9
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.2e-16 91.7 536 26.5
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.2e-16 91.7 209 33.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.8e-16 90.9 666 24.9
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.0e-16 90.5 209 33.5
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.4e-15 89.0 209 33.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.4e-15 89.0 472 24.8
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.9e-15 88.6 169 35.5
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.2e-15 87.4 156 35.3
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.2e-15 87.4 212 33.5
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 7.2e-15 86.7 169 34.9
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-14 85.9 185 36.2
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-14 85.9 175 34.3
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-14 85.5 159 33.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.6e-14 85.5 173 32.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.7e-14 84.7 158 36.7
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.7e-14 84.7 158 36.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 3.6e-14 84.3 211 31.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.7e-14 84.0 166 31.9
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.7e-14 84.0 646 24.1
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 4.7e-14 84.0 448 24.3
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 8.8e-13 79.7 111 39.6
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.1e-12 79.3 166 37.3
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.6e-12 78.2 74 47.3
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 7.4e-12 76.6 301 30.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-11 75.9 211 31.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.7e-11 75.5 202 30.2
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-11 75.5 68 48.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.7e-11 75.5 154 29.9
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 2.2e-11 75.1 131 34.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-11 75.1 131 34.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.2e-11 75.1 641 24.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.1e-10 72.8 221 29.9
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.1e-10 72.8 102 35.3
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.2e-09 69.3 167 29.3
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.2e-09 69.3 79 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-09 66.6 167 31.1
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.0e-08 66.2 481 25.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 5.0e-08 63.9 87 32.2
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.5e-07 62.4 183 27.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.5e-07 62.4 209 26.8
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.5e-07 61.6 59 45.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 3.2e-07 61.2 127 32.3
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.2e-07 60.8 210 29.0
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-06 59.3 670 20.7
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.0e-06 56.6 70 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.0e-06 56.6 70 41.4


User provided reference genes

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