Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.6e-112 409.5 212 100.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 5.2e-103 377.9 212 91.5
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-86 323.2 207 80.2
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-86 323.2 207 80.2
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.1e-84 317.0 214 75.2
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.5e-81 305.8 209 77.0
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 5.6e-81 304.7 194 80.4
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.4e-79 300.1 210 73.3
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 5.3e-79 298.1 201 75.6
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 6.9e-79 297.7 207 76.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.5e-78 296.6 210 72.4
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.4e-78 295.4 182 83.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.7e-77 293.1 206 72.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.2e-77 292.7 205 72.2
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.1e-76 290.4 207 75.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.2e-76 288.9 197 73.1
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.1e-76 287.7 212 70.3
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 7.1e-76 287.7 210 67.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.3e-76 287.3 203 71.9
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.6e-75 286.6 199 74.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 4.6e-75 285.0 209 70.3
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 7.9e-75 284.3 202 72.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.8e-74 283.1 212 67.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 5.1e-74 281.6 207 72.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 8.7e-74 280.8 202 73.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-73 280.4 212 67.0
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.1e-73 280.4 201 70.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.5e-73 280.0 208 72.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 2.5e-73 279.3 207 67.6
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 7.4e-73 277.7 199 71.9
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 9.6e-73 277.3 212 67.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.6e-72 276.6 198 70.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-71 273.9 207 65.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.4e-71 273.5 200 69.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.8e-71 273.1 201 67.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.4e-71 272.7 206 67.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.5e-70 270.0 207 68.6
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.0e-70 269.6 200 69.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.5e-70 268.5 211 65.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 4.5e-70 268.5 209 67.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.9e-69 265.8 198 66.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 3.8e-69 265.4 206 66.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.9e-69 265.0 200 68.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 8.4e-69 264.2 219 63.0
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.1e-68 263.8 203 65.0
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.4e-68 263.5 201 68.7
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.9e-68 263.1 213 63.8
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.5e-68 262.7 201 66.2
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 4.2e-68 261.9 209 64.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.6e-67 260.0 200 66.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.6e-67 258.5 180 72.8
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 6.0e-67 258.1 198 66.7
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.0e-67 258.1 212 63.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.9e-67 257.7 200 66.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.3e-66 256.9 200 65.5
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.8e-66 256.5 208 63.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 3.9e-66 255.4 200 65.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 3.9e-66 255.4 205 66.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 5.7e-65 251.5 207 63.3
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 9.6e-65 250.8 213 63.8
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 2.1e-64 249.6 206 62.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.8e-64 248.4 201 61.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 6.2e-64 248.1 206 62.6
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 8.2e-64 247.7 207 59.4
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 8.2e-64 247.7 200 63.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-63 246.9 202 62.9
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.4e-63 246.1 206 65.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 3.1e-63 245.7 209 62.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.1e-63 245.4 203 62.1
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 4.1e-63 245.4 204 59.8
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.3e-63 245.0 202 62.9
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.2e-62 243.8 208 61.5
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.0e-62 243.0 206 62.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.4e-62 242.3 205 65.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 4.5e-62 241.9 205 60.5
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.9e-60 236.5 199 57.8
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.9e-60 236.5 209 59.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.2e-60 235.3 197 61.4
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.5e-60 235.0 197 60.9
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.7e-59 232.6 206 60.2
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.1e-59 231.5 202 59.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.9e-58 228.8 210 57.6
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.9e-58 228.8 173 70.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 5.1e-58 228.4 202 57.9
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 5.1e-58 228.4 202 57.9
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.9e-57 226.5 203 58.1
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.5e-57 226.1 203 60.1
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.3e-57 225.3 202 56.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 5.7e-57 224.9 202 60.4
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 7.4e-57 224.6 193 60.1
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 7.4e-57 224.6 217 54.8
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 4.1e-55 218.8 139 77.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-53 213.8 218 56.4
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.3e-53 213.8 218 56.4
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 6.5e-53 211.5 216 53.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.5e-53 211.1 216 53.2
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.5e-53 211.1 214 56.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.4e-52 210.3 202 55.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.4e-52 210.3 202 55.4
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.9e-52 209.9 202 54.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.2e-52 208.8 186 57.0
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 9.4e-52 207.6 214 55.6
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.2e-51 207.2 198 57.6
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.6e-51 206.8 198 52.5
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-51 206.5 200 55.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.0e-50 204.1 203 52.7
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.3e-50 203.0 217 54.4
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.5e-49 199.5 203 52.7
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 4.3e-49 198.7 133 73.7
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-46 190.7 200 51.5
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.2e-44 182.6 217 48.4
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-41 174.1 124 70.2
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.5e-41 173.7 122 73.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.7e-40 170.2 199 48.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 6.3e-40 168.3 203 48.3
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.4e-39 166.4 209 48.8
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.2e-38 164.1 199 48.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.2e-37 159.8 203 50.7
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 6.3e-32 141.7 197 40.1
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-31 140.2 197 40.1
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-31 140.2 197 40.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 4.1e-31 139.0 197 41.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 9.1e-31 137.9 197 39.6
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.8e-29 132.5 83 77.1
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.5e-28 130.6 197 42.1
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.2e-28 129.4 197 39.6
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.0e-26 124.4 197 38.6
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.7e-24 117.1 184 34.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.7e-24 115.9 177 39.5
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.2e-22 110.9 198 37.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.9e-21 106.3 180 35.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 5.0e-21 105.5 184 36.4
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 2.1e-19 100.1 175 39.4
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.7e-19 99.8 187 37.4
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 4.9e-16 89.0 74 64.9
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-15 87.4 74 62.2
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-15 87.4 74 62.2
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.7e-14 83.2 62 72.6
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.0e-13 81.3 106 41.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.0e-13 81.3 95 41.1
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.0e-13 81.3 62 69.4
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.1e-12 77.8 224 27.2
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 7.3e-12 75.1 136 40.4
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.7e-11 72.4 50 68.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 6.1e-11 72.0 72 50.0
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 4.9e-08 62.4 114 31.6
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 1.6e-06 57.4 88 45.5
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 1.6e-06 57.4 50 60.0


User provided reference genes

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