Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 6.3e-282 973.4 472 100.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 6.1e-237 823.9 442 90.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.6e-222 774.2 431 87.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.4e-217 757.7 439 83.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-212 742.3 435 84.4
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.1e-212 741.9 434 82.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.1e-212 741.9 429 83.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.8e-211 737.6 429 83.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.5e-208 728.4 434 81.3
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.0e-207 725.3 434 80.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.2e-205 719.9 434 81.6
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.8e-205 718.8 434 80.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.6e-205 718.4 441 78.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.2e-205 717.6 427 80.6
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 8.1e-205 717.2 434 79.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.1e-204 716.8 434 80.2
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-204 716.5 434 80.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.8e-204 716.1 431 80.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 4.0e-204 714.9 434 80.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 5.2e-204 714.5 434 81.1
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.9e-204 714.1 431 78.9
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.8e-203 711.1 427 79.2
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-202 709.9 429 80.2
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.8e-202 708.4 434 79.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.4e-202 707.6 431 80.3
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 8.4e-202 707.2 434 79.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 8.4e-202 707.2 430 79.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.4e-202 707.2 434 79.3
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.4e-201 706.4 431 79.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.4e-201 705.7 420 82.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.2e-201 705.3 429 80.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 9.3e-201 703.7 431 78.7
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.7e-200 702.2 431 78.7
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 6.0e-200 701.0 431 78.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.0e-199 698.7 429 80.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-199 698.0 434 78.6
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.9e-198 696.0 429 77.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 5.6e-198 694.5 431 77.7
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 9.6e-198 693.7 441 75.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.3e-197 693.3 434 77.9
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.6e-197 693.0 436 78.4
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.1e-197 692.6 434 78.3
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.6e-197 691.8 434 77.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 3.6e-197 691.8 414 81.6
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.1e-196 690.3 438 74.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.4e-196 689.9 431 77.7
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.3e-196 688.0 435 76.3
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 9.0e-196 687.2 435 77.0
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.5e-195 684.9 431 77.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.8e-195 684.5 434 77.2
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 8.4e-194 680.6 429 77.4
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.4e-193 679.1 429 76.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.2e-193 678.7 431 76.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.2e-193 678.7 434 76.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 4.2e-193 678.3 431 76.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 9.3e-193 677.2 435 75.6
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.2e-192 676.8 434 76.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.6e-192 676.4 434 76.3
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.1e-191 671.4 417 77.9
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 4.8e-189 664.8 431 75.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.4e-188 663.3 431 74.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.4e-188 662.5 454 72.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.5e-187 659.8 429 74.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-187 659.4 431 74.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.9e-186 654.8 432 75.5
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 6.4e-186 654.4 431 75.4
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 6.7e-183 644.4 387 80.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.7e-183 644.0 436 72.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 5.6e-182 641.3 435 74.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 7.4e-182 641.0 415 75.9
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.1e-180 637.1 431 73.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.9e-180 634.4 429 73.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 9.0e-180 634.0 432 73.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.9e-178 629.0 431 73.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 4.9e-178 628.2 435 70.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.2e-177 625.2 452 68.1
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-176 623.6 434 72.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.3e-173 613.6 410 74.6
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.2e-173 612.8 367 79.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 2.8e-173 612.5 431 72.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.7e-173 612.1 434 71.0
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 8.2e-173 610.9 443 70.0
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.4e-172 609.4 431 70.8
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 2.4e-172 609.4 438 71.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 9.0e-172 607.4 443 69.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.5e-171 606.7 431 70.8
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.0e-171 606.3 455 69.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 4.5e-171 605.1 434 70.5
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 5.9e-171 604.7 443 70.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.8e-170 602.1 429 70.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 5.0e-170 601.7 431 70.8
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.4e-169 600.1 429 71.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 3.2e-169 599.0 434 69.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 4.2e-169 598.6 430 70.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 4.2e-169 598.6 430 70.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.3e-169 597.4 352 81.0
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.1e-168 596.3 387 73.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.1e-168 596.3 478 62.6
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.6e-168 595.5 431 69.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 7.9e-168 594.3 431 70.3
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-167 593.2 430 70.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.8e-167 593.2 431 69.8
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.7e-166 588.2 459 64.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.7e-165 585.5 433 69.5
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.5e-161 572.8 366 79.5
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.1e-160 569.7 432 65.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.0e-159 567.4 431 66.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.1e-158 563.9 433 64.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.8e-157 559.3 365 75.1
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 8.2e-157 557.8 429 67.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.4e-155 552.4 348 77.3
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.4e-143 513.8 440 59.8
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.0e-142 510.0 480 56.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.7e-141 506.9 435 63.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 5.9e-139 498.4 440 59.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.8e-138 495.7 461 57.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.3e-133 478.4 429 60.1
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.8e-118 428.7 238 87.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.1e-116 422.5 429 50.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.0e-116 421.8 328 69.2
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.7e-115 419.9 308 68.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.5e-110 404.1 510 45.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.4e-109 398.7 433 52.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 7.3e-97 358.6 230 73.5
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.8e-96 356.7 284 68.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-88 330.1 269 62.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.2e-84 316.6 248 69.0
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.1e-81 308.1 384 44.3
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.8e-77 293.1 447 40.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-69 267.3 275 51.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.4e-63 247.3 439 34.2
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 4.2e-60 236.5 234 54.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.0e-59 232.6 174 67.8
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.3e-57 226.9 313 44.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.0e-53 215.3 428 34.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.1e-52 211.8 205 52.2
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.2e-52 210.3 395 37.0
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-51 208.0 183 58.5
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.8e-50 204.5 197 51.8
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.0e-50 203.8 119 84.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.3e-49 200.3 119 82.4
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-48 198.4 119 81.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.7e-48 196.8 389 35.2
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.6e-46 190.7 204 52.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.0e-41 174.5 124 65.3
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.8e-40 170.6 318 36.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.3e-40 169.5 119 73.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.3e-40 169.5 107 74.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.3e-32 145.2 92 70.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.3e-29 135.2 122 54.1
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-28 131.7 67 92.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.5e-28 131.0 106 62.3
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.7e-25 119.8 125 56.0
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 5.5e-20 103.2 58 84.5
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.6e-17 94.4 66 69.7
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.1e-07 60.5 45 71.1
vmacro11217 Vaccinium macrocarpon HOM05D004406 ORTHO05D426987 1.2e-06 58.9 94 39.4


User provided reference genes

Program Settings