Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 7.2e-88 327.4 189 100.0
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.7e-74 282.3 186 82.8
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 7.5e-69 264.2 189 78.8
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.5e-64 250.0 191 73.8
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 7.3e-64 247.7 164 82.3
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.8e-63 245.7 205 70.2
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.2e-62 241.5 191 72.3
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.5e-61 240.0 191 71.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.2e-60 236.1 189 71.4
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 6.4e-60 234.6 187 71.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 6.4e-60 234.6 187 71.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.9e-59 233.0 190 71.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-59 233.0 186 68.8
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 4.1e-59 231.9 190 70.0
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.4e-59 231.5 194 67.5
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 7.0e-59 231.1 189 70.9
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 7.0e-59 231.1 134 86.6
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 7.0e-59 231.1 199 67.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 7.0e-59 231.1 199 67.3
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.2e-59 230.7 189 73.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.2e-58 230.3 188 68.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.1e-58 229.6 187 69.5
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.7e-58 229.2 187 71.1
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 3.5e-58 228.8 190 68.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.0e-58 228.0 187 70.6
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.0e-57 227.3 214 64.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-57 227.3 186 69.4
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.3e-57 226.9 202 67.3
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.3e-57 226.9 154 77.9
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.7e-57 226.5 189 67.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.7e-57 226.5 192 67.7
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.3e-57 226.1 193 67.9
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 3.9e-57 225.3 192 69.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.9e-57 225.3 188 67.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.9e-57 225.3 188 66.0
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 3.9e-57 225.3 190 67.4
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.6e-57 224.2 193 71.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 8.6e-57 224.2 199 67.8
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 8.6e-57 224.2 204 69.6
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.1e-56 223.8 196 65.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.5e-56 222.6 193 67.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.3e-56 222.2 190 70.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.3e-56 222.2 198 64.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 4.3e-56 221.9 196 67.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.3e-56 221.9 145 78.6
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 5.6e-56 221.5 151 78.1
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 5.6e-56 221.5 185 64.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 9.5e-56 220.7 185 65.4
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.5e-56 220.7 145 77.2
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.6e-55 219.9 194 66.0
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.6e-55 219.9 186 66.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.6e-55 219.9 190 66.3
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.7e-55 218.4 188 64.9
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.7e-55 218.4 186 73.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.2e-55 218.0 196 63.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.1e-54 217.2 196 63.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.4e-54 216.9 194 68.0
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.4e-54 216.9 193 64.2
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.3e-54 216.1 188 64.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 2.3e-54 216.1 186 65.6
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.0e-54 215.3 186 66.1
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.9e-54 214.2 189 65.6
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.9e-54 214.2 189 65.6
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.2e-53 213.8 193 67.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.2e-53 213.8 173 71.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.5e-53 213.4 186 65.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-53 213.4 187 63.6
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.5e-53 213.4 189 65.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.4e-53 211.8 186 64.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 9.9e-53 210.7 192 64.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.7e-52 209.9 189 61.9
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-51 207.2 188 65.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.1e-51 207.2 188 65.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-51 207.2 188 63.8
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.9e-51 206.5 187 63.6
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 1.9e-51 206.5 133 78.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.4e-51 206.1 188 65.4
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.4e-51 206.1 186 62.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.2e-51 205.7 185 63.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.4e-51 204.9 188 63.3
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.5e-50 202.2 188 66.5
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 4.6e-50 201.8 188 59.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.6e-50 201.8 188 61.7
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 6.0e-50 201.4 190 61.6
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.8e-50 201.1 188 62.8
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.0e-49 200.7 185 63.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-49 200.7 187 63.6
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.3e-49 200.3 191 61.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.7e-49 199.9 195 59.5
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.7e-49 199.9 188 63.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.3e-49 199.5 189 63.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.0e-49 199.1 188 62.8
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.9e-49 198.7 188 62.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.9e-49 198.7 188 61.7
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 5.1e-49 198.4 188 62.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.1e-48 197.2 188 61.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.5e-48 196.1 203 61.6
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 9.5e-48 194.1 185 67.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.2e-47 193.7 191 60.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.8e-47 192.6 192 58.3
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.8e-46 189.9 186 55.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.1e-46 189.1 120 78.3
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 5.2e-46 188.3 188 59.6
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-45 187.2 183 59.0
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 3.4e-45 185.7 193 57.5
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 3.4e-45 185.7 193 57.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 5.4e-43 178.3 200 56.5
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.1e-42 176.4 185 55.1
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 7.8e-42 174.5 187 56.1
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.0e-41 174.1 188 58.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.3e-41 173.7 194 56.2
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.0e-41 172.6 185 62.7
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-39 166.8 183 55.2
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 4.7e-39 165.2 141 61.0
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 6.2e-39 164.9 172 60.5
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.8e-38 163.3 149 70.5
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-36 157.1 91 84.6
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-36 156.8 187 55.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.9e-36 156.0 130 63.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.2e-35 152.5 151 62.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.5e-34 149.1 119 71.4
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 4.6e-34 148.7 200 47.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.7e-33 146.7 195 46.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-32 143.7 102 67.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.4e-30 136.3 112 61.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.4e-29 132.5 108 62.0
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 4.5e-29 132.1 101 66.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 9.9e-29 131.0 101 65.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.2e-28 129.8 126 54.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.2e-28 129.8 107 69.2
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 8.4e-28 127.9 109 58.7
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 9.3e-27 124.4 102 63.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.3e-27 124.4 106 61.3
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.5e-24 117.1 115 57.4
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.5e-24 116.3 94 58.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.8e-23 112.8 103 55.3
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 8.1e-23 111.3 98 57.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.4e-22 110.5 187 43.9
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.4e-22 109.8 110 51.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 2.4e-22 109.8 103 56.3
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 6.9e-22 108.2 137 51.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-21 105.5 96 66.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-20 104.0 80 62.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.2e-19 99.4 71 64.8
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.0e-18 95.1 64 78.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 7.9e-18 94.7 102 45.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.8e-17 93.6 101 50.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.3e-17 93.2 67 73.1
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 6.7e-17 91.7 94 53.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 3.3e-16 89.4 98 43.9
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.3e-16 89.0 137 45.3
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.5e-11 73.2 87 39.1


User provided reference genes

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