Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13118 Davidia involucrata HOM05D004313 ORTHO05D005036 1.1e-33 146.0 71 100.0
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 6.8e-31 136.7 69 94.2
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 3.4e-30 134.4 69 92.8
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 4.4e-30 134.0 69 91.3
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 4.4e-30 134.0 69 91.3
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 4.4e-30 134.0 69 91.3
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 1.7e-29 132.1 69 89.9
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 1.7e-29 132.1 69 91.3
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.2e-29 131.7 69 89.9
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 2.9e-29 131.3 69 89.9
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 2.9e-29 131.3 69 89.9
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 2.9e-29 131.3 69 89.9
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 4.9e-29 130.6 69 89.9
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 4.9e-29 130.6 69 89.9
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 6.4e-29 130.2 69 89.9
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 6.4e-29 130.2 69 89.9
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 89.9
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 88.4
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 88.4
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 88.4
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 88.4
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 8.3e-29 129.8 69 88.4
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 1.1e-28 129.4 69 89.9
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.1e-28 129.4 69 89.9
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 1.4e-28 129.0 69 88.4
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 1.9e-28 128.6 69 88.4
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 1.9e-28 128.6 69 88.4
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 2.4e-28 128.3 69 87.0
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 3.2e-28 127.9 69 88.4
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 88.4
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 88.4
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 88.4
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 88.4
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 88.4
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 4.1e-28 127.5 69 87.0
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 5.4e-28 127.1 69 85.5
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 5.4e-28 127.1 69 85.5
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 5.4e-28 127.1 69 85.5
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 7.0e-28 126.7 69 88.4
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 7.0e-28 126.7 69 87.0
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 7.0e-28 126.7 69 85.5
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 9.2e-28 126.3 69 87.0
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 9.2e-28 126.3 69 85.5
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 9.2e-28 126.3 69 88.4
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.2e-27 125.9 68 88.2
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.2e-27 125.9 69 87.0
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 1.6e-27 125.6 69 88.4
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 1.6e-27 125.6 69 87.0
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 1.6e-27 125.6 69 88.4
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.7e-27 124.8 74 83.8
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 2.7e-27 124.8 69 87.0
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 2.7e-27 124.8 69 85.5
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.7e-27 124.8 69 85.5
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 3.5e-27 124.4 74 83.8
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 4.6e-27 124.0 69 82.6
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 6.0e-27 123.6 69 85.5
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 7.8e-27 123.2 69 85.5
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 1.0e-26 122.9 69 82.6
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 1.7e-26 122.1 69 81.2
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 1.7e-26 122.1 69 85.5
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 2.3e-26 121.7 69 85.5
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 3.9e-26 120.9 69 79.7
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 6.6e-26 120.2 69 82.6
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 1.1e-25 119.4 69 82.6
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 3.3e-25 117.9 69 84.1
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 4.3e-25 117.5 69 78.3
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 4.3e-25 117.5 69 78.3
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 7.3e-25 116.7 69 79.7
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.3e-25 116.7 69 79.7
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.3e-25 116.7 69 79.7
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 9.5e-25 116.3 88 68.2
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 9.5e-25 116.3 88 68.2
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 3.6e-24 114.4 69 78.3
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.7e-24 114.0 69 78.3
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 6.2e-24 113.6 69 76.8
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 8.0e-24 113.2 69 76.8
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 1.4e-23 112.5 68 79.4
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.4e-23 112.5 69 78.3
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.3e-23 111.7 68 79.4
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 3.1e-23 111.3 69 76.8
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 3.1e-23 111.3 103 60.2
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 3.1e-23 111.3 69 79.7
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 4.0e-23 110.9 69 78.3
Cpa.g.sc391.3 Carica papaya HOM05D004313 ORTHO05D005036 4.0e-23 110.9 69 78.3
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 4.0e-23 110.9 69 76.8
HPP92_025604 Vanilla planifolia HOM05D004313 ORTHO05D005036 8.9e-23 109.8 69 76.8
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 75.4
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 1.5e-22 109.0 69 76.8
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 2.6e-22 108.2 69 75.4
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 3.4e-22 107.8 69 75.4
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 3.4e-22 107.8 69 75.4
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 3.4e-22 107.8 68 76.5
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-21 105.9 69 73.9
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-21 105.9 69 73.9
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 1.3e-21 105.9 69 73.9
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 1.1e-20 102.8 62 79.0
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 5.4e-20 100.5 69 68.1
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 1.9e-17 92.0 69 63.8
SEGI_31090 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 2.5e-17 91.7 69 66.7
SEGI_35789 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 2.5e-17 91.7 69 66.7
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 9.5e-17 89.7 69 60.9
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 1.1e-15 86.3 69 56.5
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 1.4e-15 85.9 53 73.6
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 5.2e-15 84.0 68 55.9
AagrBONN_evm.TU.Sc2ySwM_117.3833 Anthoceros agrestis HOM05D004313 ORTHO05D005036 5.8e-14 80.5 69 53.6
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 7.5e-14 80.1 68 52.9


User provided reference genes

Program Settings