Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13074 Davidia involucrata HOM05D000325 ORTHO05D000583 4.7e-138 494.6 261 100.0
Dinv44715 Davidia involucrata HOM05D000325 ORTHO05D000583 4.3e-99 365.2 265 77.4
CSS0040428 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 1.2e-69 267.3 263 62.0
Hma1.2p1_1088F.1_g255560 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 4.4e-67 258.8 285 55.8
CSS0031658 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 1.5e-59 233.8 231 61.9
TAR381G0770 Trochodendron aralioides HOM05D000325 ORTHO05D000583 5.7e-59 231.9 268 55.6
Prupe.8G049000 Prunus persica HOM05D000325 ORTHO05D000583 1.2e-56 224.2 266 54.5
CiPaw.15G007100 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.1e-54 217.6 266 52.6
Cc10_g06150 Coffea canephora HOM05D000325 ORTHO05D000583 4.2e-54 215.7 268 51.9
Haze_17882 Corylus avellana HOM05D000325 ORTHO05D000583 5.5e-54 215.3 294 50.0
Rhsim06G0087600 Rhododendron simsii HOM05D000325 ORTHO05D000583 9.4e-54 214.5 255 58.0
Hma1.2p1_2822F.1_g329040 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 2.1e-53 213.4 285 49.8
Atru.chr13.1887 Acer truncatum HOM05D000325 ORTHO05D000583 1.0e-52 211.1 256 53.1
vmacro21209 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 4.0e-52 209.1 247 55.1
FAN27G3024 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.6e-51 206.5 261 53.3
FAN24G2200 Fragaria x ananassa HOM05D000325 ORTHO05D000583 3.4e-51 206.1 262 52.7
FvH4_2g12480 Fragaria vesca HOM05D000325 ORTHO05D000583 4.4e-51 205.7 262 53.1
MD00G1078400 Malus domestica HOM05D000325 ORTHO05D000583 5.7e-51 205.3 263 52.5
QL02p034859 Quercus lobata HOM05D000325 ORTHO05D000583 7.5e-51 204.9 260 53.8
FAN20G2075 Fragaria x ananassa HOM05D000325 ORTHO05D000583 1.3e-50 204.1 261 52.1
FAN15G1419 Fragaria x ananassa HOM05D000325 ORTHO05D000583 1.8e-49 200.3 260 52.7
CiPaw.16G005900 Carya illinoinensis HOM05D000325 ORTHO05D000583 3.1e-49 199.5 269 46.5
Duzib211G0208 Durio zibethinus HOM05D000325 ORTHO05D000583 3.1e-49 199.5 256 52.3
Lj4A110G75 Lonicera japonica HOM05D000325 ORTHO05D000583 5.4e-49 198.7 268 51.5
RcHm_v2.0_Chr6g0272921 Rosa chinensis HOM05D000325 ORTHO05D000583 7.7e-48 194.9 306 45.4
Ciclev10000853m.g Citrus clementina HOM05D000325 ORTHO05D000583 2.9e-47 193.0 264 51.9
MD10G1043300 Malus domestica HOM05D000325 ORTHO05D000583 8.5e-47 191.4 320 43.1
CANSAT25G1187 Cannabis sativa HOM05D000325 ORTHO05D000583 1.5e-46 190.7 263 51.0
Duzib116G0729 Durio zibethinus HOM05D000325 ORTHO05D000583 2.5e-46 189.9 265 50.2
Cpa.g.sc66.122 Carica papaya HOM05D000325 ORTHO05D000583 1.6e-45 187.2 264 46.6
TAR628G0208 Trochodendron aralioides HOM05D000325 ORTHO05D000583 2.7e-45 186.4 269 49.4
VMungo0464G0878 Vigna mungo HOM05D000325 ORTHO05D000583 2.7e-45 186.4 262 47.7
Thecc.08G198200 Theobroma cacao HOM05D000325 ORTHO05D000583 1.0e-44 184.5 259 50.6
Peaxi162Scf00267g01222 Petunia axillaris HOM05D000325 ORTHO05D000583 1.8e-44 183.7 267 47.2
Potri.013G117100 Populus trichocarpa HOM05D000325 ORTHO05D000583 2.3e-44 183.3 300 42.3
Solyc04g072560.3 Solanum lycopersicum HOM05D000325 ORTHO05D000583 3.0e-44 183.0 273 48.7
PGSC0003DMG400027555 Solanum tuberosum HOM05D000325 ORTHO05D000583 4.0e-44 182.6 273 48.4
Sopen04g028760 Solanum pennellii HOM05D000325 ORTHO05D000583 5.2e-44 182.2 273 49.1
Glyma.16G157900 Glycine max HOM05D000325 ORTHO05D000583 1.5e-43 180.6 264 47.0
Manes.02G187600 Manihot esculenta HOM05D000325 ORTHO05D000583 2.0e-43 180.3 265 44.9
Sabra13G0099200 Salix brachista HOM05D000325 ORTHO05D000583 5.7e-43 178.7 323 39.3
Lj2g0001824 Lotus japonicus HOM05D000325 ORTHO05D000583 7.5e-43 178.3 275 49.1
Actinidia15629 Actinidia chinensis HOM05D000325 ORTHO05D000583 1.3e-42 177.6 183 60.7
TAR628G1619 Trochodendron aralioides HOM05D000325 ORTHO05D000583 2.2e-42 176.8 269 48.3
TAR628G1362 Trochodendron aralioides HOM05D000325 ORTHO05D000583 5.4e-41 172.2 269 47.6
Potri.019G087400 Populus trichocarpa HOM05D000325 ORTHO05D000583 1.6e-40 170.6 296 40.5
CAN.G1010.19 Capsicum annuum HOM05D000325 ORTHO05D000583 1.3e-39 167.5 270 46.7
Phvul.004G086100 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 1.3e-39 167.5 262 43.5
Nn1g05203 Nelumbo nucifera HOM05D000325 ORTHO05D000583 1.7e-39 167.2 246 48.8
Manes.18G097500 Manihot esculenta HOM05D000325 ORTHO05D000583 2.3e-39 166.8 261 45.6
Nn5g28949 Nelumbo nucifera HOM05D000325 ORTHO05D000583 1.5e-38 164.1 251 49.0
PSO447G0148 Papaver somniferum HOM05D000325 ORTHO05D000583 3.3e-38 162.9 271 43.2
Gohir.A06G109400 Gossypium hirsutum HOM05D000325 ORTHO05D000583 2.1e-37 160.2 267 45.3
arahy.Tifrunner.gnm1.ann1.YQZL1S Arachis hypogaea HOM05D000325 ORTHO05D000583 3.6e-37 159.5 280 43.2
arahy.Tifrunner.gnm1.ann1.SRJ81T Arachis hypogaea HOM05D000325 ORTHO05D000583 4.7e-37 159.1 280 44.3
Nitab4.5_0000553g0100 Nicotiana tabacum HOM05D000325 ORTHO05D000583 4.7e-37 159.1 276 44.6
Ca_04515_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 8.0e-37 158.3 269 45.0
Oeu027228.1 Olea europaea HOM05D000325 ORTHO05D000583 1.4e-36 157.5 259 44.8
PSO210G5173 Papaver somniferum HOM05D000325 ORTHO05D000583 1.8e-36 157.1 271 41.7
Glyma.02G075900 Glycine max HOM05D000325 ORTHO05D000583 4.0e-36 156.0 260 45.8
TWI32G0264 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 8.9e-36 154.8 329 39.2
Eucgr.F04150 Eucalyptus grandis HOM05D000325 ORTHO05D000583 9.8e-35 151.4 293 41.3
Nitab4.5_0001307g0110 Nicotiana tabacum HOM05D000325 ORTHO05D000583 3.7e-34 149.4 275 43.6
Lalb_Chr03g0035781 Lupinus albus HOM05D000325 ORTHO05D000583 4.9e-34 149.1 282 42.2
MSTRG.24960 Avicennia marina HOM05D000325 ORTHO05D000583 4.1e-33 146.0 261 43.3
MBI05_g01283_MAGBIO Magnolia biondii HOM05D000325 ORTHO05D000583 2.7e-32 143.3 260 43.1
MSTRG.945 Avicennia marina HOM05D000325 ORTHO05D000583 1.0e-31 141.4 259 42.9
EL10Ac1g00867 Beta vulgaris HOM05D000325 ORTHO05D000583 7.3e-30 135.2 277 40.8
Gorai.009G261900 Gossypium raimondii HOM05D000325 ORTHO05D000583 9.5e-30 134.8 248 40.7
MSTRG.24476 Avicennia marina HOM05D000325 ORTHO05D000583 3.6e-29 132.9 251 41.8
Psat1g093520 Pisum sativum HOM05D000325 ORTHO05D000583 3.6e-29 132.9 315 36.5
Oeu036730.1 Olea europaea HOM05D000325 ORTHO05D000583 8.0e-29 131.7 184 52.2
TPR.G16209 Trifolium pratense HOM05D000325 ORTHO05D000583 2.3e-28 130.2 348 34.5
Gohir.D05G250500 Gossypium hirsutum HOM05D000325 ORTHO05D000583 8.9e-28 128.3 248 39.5
Medtr6g038150 Medicago truncatula HOM05D000325 ORTHO05D000583 8.9e-28 128.3 322 37.0
Lalb_Chr01g0009901 Lupinus albus HOM05D000325 ORTHO05D000583 1.2e-27 127.9 175 50.3
Sed0025546 Sechium edule HOM05D000325 ORTHO05D000583 1.5e-27 127.5 323 35.0
Gohir.D06G113600 Gossypium hirsutum HOM05D000325 ORTHO05D000583 7.5e-27 125.2 219 43.8
Gohir.A05G248700 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.3e-26 124.4 250 39.2
Migut.C00220 Erythranthe guttata HOM05D000325 ORTHO05D000583 3.7e-26 122.9 258 40.3
Gorai.010G129400 Gossypium raimondii HOM05D000325 ORTHO05D000583 8.3e-26 121.7 218 42.7
ClCG08G003020 Citrullus lanatus HOM05D000325 ORTHO05D000583 1.4e-25 120.9 309 37.9
CsaV3_6G002880 Cucumis sativus L. HOM05D000325 ORTHO05D000583 4.6e-24 115.9 312 37.5
SalBow7G4286 Salvia bowleyana HOM05D000325 ORTHO05D000583 4.6e-24 115.9 252 43.3
Ah.12g063980 Amaranthus hybridus HOM05D000325 ORTHO05D000583 1.3e-23 114.4 268 38.4
MELO3C026153.2 Cucumis melo HOM05D000325 ORTHO05D000583 1.7e-23 114.0 325 36.3
PGR102G1485 Punica granatum HOM05D000325 ORTHO05D000583 1.1e-22 111.3 284 38.4
SGA_v2.0_scaffold315G48376 Striga asiatica HOM05D000325 ORTHO05D000583 5.6e-22 109.0 245 36.7
Aqoxy5G01982 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 7.3e-22 108.6 296 34.8
Sed0013859 Sechium edule HOM05D000325 ORTHO05D000583 1.6e-21 107.5 308 35.7
THA.LOC104816186 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 6.2e-21 105.5 263 36.5
Sc26g0002360 Simmondsia chinensis HOM05D000325 ORTHO05D000583 9.8e-19 98.2 250 38.4
DCAR_019987 Daucus carota HOM05D000325 ORTHO05D000583 3.2e-17 93.2 267 33.0
SGA_v2.0_scaffold201G41421 Striga asiatica HOM05D000325 ORTHO05D000583 3.2e-17 93.2 198 44.4
GSVIVG01001596001 Vitis vinifera HOM05D000325 ORTHO05D000583 2.1e-16 90.5 107 49.5
unitig_37.g13118 Utricularia gibba HOM05D000325 ORTHO05D000583 6.0e-16 89.0 249 37.8
AUR62024881 Chenopodium quinoa HOM05D000325 ORTHO05D000583 1.0e-15 88.2 268 34.7
VMungo0720G2227 Vigna mungo HOM05D000325 ORTHO05D000583 2.3e-15 87.0 235 33.2
SalBow6G3024 Salvia bowleyana HOM05D000325 ORTHO05D000583 6.6e-15 85.5 260 36.5
ECA247G1322 Erigeron canadensis HOM05D000325 ORTHO05D000583 8.6e-15 85.1 276 34.1
SalBow6G3856 Salvia bowleyana HOM05D000325 ORTHO05D000583 8.6e-15 85.1 260 36.2
AUR62030666 Chenopodium quinoa HOM05D000325 ORTHO05D000583 2.1e-13 80.5 267 33.3
TWI60G1093 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 3.1e-12 76.6 137 44.5
ATR0564G174 Amborella trichopoda HOM05D000325 ORTHO05D000583 8.9e-12 75.1 180 38.3
CDE08G1455 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 1.2e-11 74.7 221 32.6
AT1G34220 Arabidopsis thaliana HOM05D000325 ORTHO05D000583 1.5e-11 74.3 369 28.2
BolC6t36310H Brassica oleracea HOM05D000325 ORTHO05D000583 1.5e-11 74.3 299 31.1
Glyma.10G218700 Glycine max HOM05D000325 ORTHO05D000583 1.5e-11 74.3 226 30.5
BcaC08g43800 Brassica carinata HOM05D000325 ORTHO05D027058 2.6e-11 73.6 298 31.2
Hund26660 Selenicereus undatus HOM05D000325 ORTHO05D000583 4.4e-11 72.8 207 36.2
COL.COLO4_36809 Corchorus olitorius HOM05D000325 ORTHO05D000583 2.9e-10 70.1 106 45.3
CDE02G4704 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 4.9e-10 69.3 264 34.1
THA.LOC104806777 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 1.1e-09 68.2 269 31.6
HanXRQChr02g0043691 Helianthus annuus HOM05D000325 ORTHO05D000583 1.9e-09 67.4 278 34.5
Sp1g29470 Schrenkiella parvula HOM05D000325 ORTHO05D000583 2.4e-09 67.0 337 27.0
Lsat_1_v5_gn_1_4741 Lactuca sativa HOM05D000325 ORTHO05D000583 1.2e-08 64.7 276 34.1
A08p08320 Brassica napus HOM05D000325 ORTHO05D000583 1.0e-07 61.6 266 27.8
DCAR_018394 Daucus carota HOM05D002426 ORTHO05D002873 3.9e-07 59.7 115 40.9
Carub.0001s3236 Capsella rubella HOM05D000325 ORTHO05D000583 8.6e-07 58.5 244 28.3
BraA08t32849Z Brassica rapa HOM05D000325 ORTHO05D000583 1.5e-06 57.8 299 26.4
Zm00001eb171990 Zea mays HOM05D000325 ORTHO05D000583 1.9e-06 57.4 287 28.9
SEGI_36265 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 5.6e-06 55.8 174 37.9
Aa31LG6G8360 Aethionema arabicum HOM05D000325 ORTHO05D000583 7.3e-06 55.5 311 28.3
BolC8t47870H Brassica oleracea HOM05D000325 ORTHO05D000583 9.6e-06 55.1 197 33.0


User provided reference genes

Program Settings