Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 2.4e-130 468.8 229 100.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 9.2e-37 157.9 316 38.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 9.2e-21 104.8 233 35.6
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 1.0e-19 101.3 127 47.2
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-19 100.9 229 31.4
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.6e-19 98.6 255 33.3
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.6e-19 98.6 238 32.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.8e-16 88.6 147 33.3
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.5e-15 87.4 138 36.2
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.7e-14 84.0 151 37.7
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-14 84.0 113 41.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-14 83.2 116 41.4
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.9e-14 82.4 116 41.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.1e-13 81.3 116 40.5
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-13 81.3 138 37.7
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.4e-13 80.9 135 36.3
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-13 80.9 167 36.5
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-13 80.1 127 38.6
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.2e-13 79.7 198 29.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.2e-13 79.7 128 37.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 4.2e-13 79.3 230 30.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 5.4e-13 79.0 191 32.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 9.3e-13 78.2 176 35.2
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.2e-12 77.8 142 35.2
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.6e-12 77.4 177 34.5
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.1e-12 77.0 131 37.4
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 4.6e-12 75.9 161 32.9
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 4.6e-12 75.9 161 32.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.0e-12 75.5 121 39.7
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 7.8e-12 75.1 136 35.3
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.0e-11 74.7 169 34.9
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.0e-11 74.7 163 33.1
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.3e-11 73.6 134 38.8
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.0e-11 73.2 154 37.0
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.0e-11 73.2 112 41.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.0e-11 73.2 112 41.1
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 6.6e-11 72.0 192 31.8
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 8.7e-11 71.6 176 34.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-10 70.9 143 35.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.5e-10 70.1 164 34.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.3e-10 69.7 133 36.1
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.6e-10 68.9 116 34.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 7.3e-10 68.6 169 33.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.6e-10 68.2 118 40.7
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-09 67.8 131 34.4
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.6e-09 67.4 98 35.7
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.6e-09 67.4 119 37.8
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.1e-09 67.0 136 31.6
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.8e-09 66.6 155 33.5
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.8e-09 66.6 153 30.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.8e-09 66.6 136 36.0
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 3.6e-09 66.2 166 32.5
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.8e-09 65.9 135 33.3
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.2e-09 65.5 188 29.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 8.1e-09 65.1 145 36.6
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.1e-09 65.1 154 34.4
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 8.1e-09 65.1 128 34.4
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 8.1e-09 65.1 131 38.9
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.1e-08 64.7 170 31.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-08 64.7 142 35.2
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-08 64.7 119 32.8
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.4e-08 64.3 141 34.8
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.8e-08 63.9 140 37.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.8e-08 63.9 119 39.5
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-08 63.9 142 36.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.8e-08 63.9 68 48.5
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.4e-08 63.5 108 38.0
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.4e-08 63.5 141 34.8
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.4e-08 63.5 137 35.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.4e-08 63.5 141 34.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-08 63.5 140 35.7
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 2.4e-08 63.5 143 33.6
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 2.4e-08 63.5 146 32.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.1e-08 63.2 126 38.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 3.1e-08 63.2 126 38.1
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 3.1e-08 63.2 119 37.8
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.1e-08 63.2 170 32.9
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 3.1e-08 63.2 99 37.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 4.0e-08 62.8 135 35.6
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.0e-08 62.8 119 33.6
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 5.3e-08 62.4 139 34.5
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 5.3e-08 62.4 121 36.4
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.3e-08 62.4 142 35.9
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.3e-08 62.4 142 35.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.3e-08 62.4 120 39.2
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.3e-08 62.4 168 34.5
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.3e-08 62.4 74 43.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.0e-08 61.6 122 35.2
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 9.0e-08 61.6 103 36.9
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-07 61.2 122 35.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-07 60.8 123 35.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.0e-07 60.5 141 36.9
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.0e-07 60.5 137 35.8
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-07 60.1 136 35.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-07 60.1 110 35.5
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-07 60.1 122 35.2
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.6e-07 60.1 77 37.7
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-07 59.7 48 56.2
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-07 59.7 48 56.2
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.4e-07 59.7 143 31.5
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.4e-07 59.7 100 35.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.4e-07 59.3 126 34.1
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.4e-07 59.3 90 36.7
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 5.8e-07 58.9 48 52.1
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 5.8e-07 58.9 77 37.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 7.6e-07 58.5 71 42.3
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 7.6e-07 58.5 62 48.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 9.9e-07 58.2 59 45.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 9.9e-07 58.2 112 34.8
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 9.9e-07 58.2 68 41.2
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 9.9e-07 58.2 47 53.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-06 57.8 68 45.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-06 57.0 84 38.1
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 6.4e-06 55.5 88 37.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.4e-06 55.5 128 31.2
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.4e-06 55.5 103 39.8
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.4e-06 55.1 122 31.1


User provided reference genes

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