Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13020 Davidia involucrata HOM05D019202 ORTHO05D182055 2.0e-220 768.8 393 100.0
Dinv26744 Davidia involucrata HOM05D019202 ORTHO05D178991 3.8e-155 552.0 287 93.7
Dinv17879 Davidia involucrata HOM05D019202 ORTHO05D182521 2.7e-113 412.9 219 92.7
Dinv21972 Davidia involucrata HOM05D019202 ORTHO05D179040 4.3e-18 96.7 68 82.4
Dinv10036 Davidia involucrata HOM05D019202 ORTHO05D179674 2.1e-12 77.8 61 62.3
TWI38G0942 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 4.6e-12 76.6 112 42.9
QL08p000375 Quercus lobata HOM05D000081 ORTHO05D000036 6.0e-12 76.3 111 45.0
CiPaw.11G211300 Carya illinoinensis HOM05D000081 ORTHO05D000036 7.9e-12 75.9 107 45.8
Dinv42531 Davidia involucrata HOM05D000081 ORTHO05D000036 7.9e-12 75.9 104 46.2
Hma1.2p1_0193F.1_g084400 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 7.9e-12 75.9 106 46.2
Duzib213G0494 Durio zibethinus HOM05D000081 ORTHO05D000036 3.0e-11 73.9 126 39.7
Haze_09922 Corylus avellana HOM05D000081 ORTHO05D000036 6.7e-11 72.8 113 42.5
COL.COLO4_07795 Corchorus olitorius HOM05D000081 ORTHO05D000036 8.7e-11 72.4 109 41.3
Thecc.07G000700 Theobroma cacao HOM05D000081 ORTHO05D000036 8.7e-11 72.4 109 42.2
Cfa016968 Carpinus fangiana HOM05D000081 ORTHO05D000036 2.5e-10 70.9 113 41.6
Prupe.6G036300 Prunus persica HOM05D000081 ORTHO05D000036 4.3e-10 70.1 107 43.0
Gohir.A08G026100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 7.4e-10 69.3 109 41.3
TWI39G1194 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 7.4e-10 69.3 112 40.2
arahy.Tifrunner.gnm1.ann1.691ACA Arachis hypogaea HOM05D000081 ORTHO05D000036 9.6e-10 68.9 106 43.4
arahy.Tifrunner.gnm1.ann1.SLD8K7 Arachis hypogaea HOM05D000081 ORTHO05D000036 9.6e-10 68.9 106 43.4
Dinv19637 Davidia involucrata HOM05D000081 ORTHO05D000036 1.3e-09 68.6 136 39.0
RcHm_v2.0_Chr5g0074411 Rosa chinensis HOM05D000081 ORTHO05D000036 2.1e-09 67.8 107 42.1
Duzib268G0222 Durio zibethinus HOM05D000081 ORTHO05D000036 2.8e-09 67.4 94 44.7
FvH4_3g41430 Fragaria vesca HOM05D000081 ORTHO05D000036 2.8e-09 67.4 107 42.1
FAN11G0082 Fragaria x ananassa HOM05D000081 ORTHO05D000036 2.8e-09 67.4 107 42.1
FAN21G1723 Fragaria x ananassa HOM05D000081 ORTHO05D000036 2.8e-09 67.4 107 42.1
FAN25G3806 Fragaria x ananassa HOM05D000081 ORTHO05D000036 2.8e-09 67.4 107 42.1
Cpa.g.sc12.58 Carica papaya HOM05D000081 ORTHO05D000036 3.7e-09 67.0 108 38.0
Gorai.004G034600 Gossypium raimondii HOM05D000081 ORTHO05D000036 6.2e-09 66.2 109 40.4
CSS0029789 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 8.2e-09 65.9 91 47.3
Lj3g0012883 Lotus japonicus HOM05D000081 ORTHO05D000036 8.2e-09 65.9 107 40.2
MSTRG.13054 Avicennia marina HOM05D000081 ORTHO05D000036 1.1e-08 65.5 105 42.9
Gohir.D08G036600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.1e-08 65.5 109 40.4
Rhsim04G0007000 Rhododendron simsii HOM05D000081 ORTHO05D000036 1.1e-08 65.5 99 43.4
Atru.chr2.3906 Acer truncatum HOM05D000081 ORTHO05D000036 1.4e-08 65.1 130 38.5
Actinidia03588 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.4e-08 65.1 103 43.7
Nitab4.5_0000294g0180 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-08 64.7 123 35.8
Nitab4.5_0001732g0010 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-08 64.7 123 35.8
Rhsim06G0235700 Rhododendron simsii HOM05D000081 ORTHO05D000036 1.8e-08 64.7 128 36.7
MD03G1044400 Malus domestica HOM05D000081 ORTHO05D000036 2.4e-08 64.3 107 40.2
CSS0041811 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 1.2e-07 62.0 100 44.0
ECA232G4371 Erigeron canadensis HOM05D000060 ORTHO05D000082 1.2e-07 62.0 103 39.8
Dinv40401 Davidia involucrata HOM05D000760 ORTHO05D000618 2.0e-07 61.2 41 75.6
Manes.01G007600 Manihot esculenta HOM05D000081 ORTHO05D000036 2.0e-07 61.2 129 34.9
Dinv38448 Davidia involucrata HOM05D000005 ORTHO05D000012 2.6e-07 60.8 44 86.4
vmacro09795 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 2.6e-07 60.8 99 40.4
ClCG10G003980 Citrullus lanatus HOM05D000081 ORTHO05D000036 3.4e-07 60.5 107 36.4
ClCG10G004000 Citrullus lanatus HOM05D000081 ORTHO05D000036 3.4e-07 60.5 107 36.4
Ca_14126_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 4.5e-07 60.1 108 37.0
Glyma.04G115500 Glycine max HOM05D000081 ORTHO05D000036 4.5e-07 60.1 107 40.2
MELO3C014066.2 Cucumis melo HOM05D000081 ORTHO05D000036 5.8e-07 59.7 129 34.1
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 7.6e-07 59.3 40 87.5
Lalb_Chr18g0048721 Lupinus albus HOM05D000081 ORTHO05D000036 1.0e-06 58.9 105 38.1
PGSC0003DMG400022143 Solanum tuberosum HOM05D000081 ORTHO05D000036 1.3e-06 58.5 100 40.0
CAN.G623.79 Capsicum annuum HOM05D000081 ORTHO05D000036 1.7e-06 58.2 100 41.0
CDE06G2134 Ceratophyllum demersum HOM05D000060 ORTHO05D000082 1.7e-06 58.2 43 58.1
CDE07G1980 Ceratophyllum demersum HOM05D000060 ORTHO05D000082 1.7e-06 58.2 43 58.1
Pp3c19_19400 Physcomitrium patens HOM05D000060 ORTHO05D000082 1.7e-06 58.2 37 67.6
CSS0025859 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 67.6
CSS0044241 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 67.6
Cpa.g.sc110.17 Carica papaya HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 67.6
Peaxi162Scf00232g00810 Petunia axillaris HOM05D000081 ORTHO05D000036 2.2e-06 57.8 123 35.8
Pp3c19_19610 Physcomitrium patens HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 64.9
Pp3c22_16800 Physcomitrium patens HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 64.9
Potri.011G169300 Populus trichocarpa HOM05D000081 ORTHO05D000036 2.2e-06 57.8 109 38.5
Sabra12G0060100 Salix brachista HOM05D000060 ORTHO05D000082 2.2e-06 57.8 37 67.6
AagrBONN_evm.TU.Sc2ySwM_340.300 Anthoceros agrestis HOM05D000060 ORTHO05D000082 2.9e-06 57.4 37 64.9
SMO115G0221 Selaginella moellendorffii HOM05D000060 ORTHO05D000082 2.9e-06 57.4 37 64.9
CANSAT80G2349 Cannabis sativa HOM05D000060 ORTHO05D000082 3.8e-06 57.0 37 64.9
ECA232G1691 Erigeron canadensis HOM05D000060 ORTHO05D000082 3.8e-06 57.0 84 41.7
HanXRQChr05g0146401 Helianthus annuus HOM05D000060 ORTHO05D000082 3.8e-06 57.0 84 41.7
Sopen07g034400 Solanum pennellii HOM05D000081 ORTHO05D000036 3.8e-06 57.0 107 37.4
CsaV3_3G003840 Cucumis sativus L. HOM05D000081 ORTHO05D000036 4.9e-06 56.6 129 33.3
Duzib187G1346 Durio zibethinus HOM05D000060 ORTHO05D000082 4.9e-06 56.6 43 55.8
HPP92_004518 Vanilla planifolia HOM05D000060 ORTHO05D000082 4.9e-06 56.6 56 50.0
HPP92_004527 Vanilla planifolia HOM05D000060 ORTHO05D000082 4.9e-06 56.6 56 50.0
COL.COLO4_29101 Corchorus olitorius HOM05D000060 ORTHO05D000082 6.5e-06 56.2 43 55.8
Duzib264G0277 Durio zibethinus HOM05D000060 ORTHO05D000082 6.5e-06 56.2 43 55.8
Eucgr.K02809 Eucalyptus grandis HOM05D000060 ORTHO05D000082 6.5e-06 56.2 36 66.7
Phvul.005G005800 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 6.5e-06 56.2 95 41.1
Potri.T125408 Populus trichocarpa HOM05D000060 ORTHO05D000082 6.5e-06 56.2 51 54.9
PGR044G1751 Punica granatum HOM05D000060 ORTHO05D000082 6.5e-06 56.2 36 66.7
Thecc.04G016300 Theobroma cacao HOM05D000060 ORTHO05D000082 6.5e-06 56.2 43 55.8
MSTRG.23158 Avicennia marina HOM05D000060 ORTHO05D000082 8.4e-06 55.8 37 64.9
Ciclev10007904m.g Citrus clementina HOM05D000081 ORTHO05D000036 8.4e-06 55.8 130 34.6
Nn1g07617 Nelumbo nucifera HOM05D000081 ORTHO05D000036 8.4e-06 55.8 114 37.7
Pp3c22_5950 Physcomitrium patens HOM05D000060 ORTHO05D000082 8.4e-06 55.8 46 54.3
Solyc07g066220.3 Solanum lycopersicum HOM05D000081 ORTHO05D000036 8.4e-06 55.8 107 37.4
HPP92_019607 Vanilla planifolia HOM05D000060 ORTHO05D000082 8.4e-06 55.8 59 49.2


User provided reference genes

Program Settings