Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 7.7e-228 793.9 533 100.0
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.2e-174 616.3 447 87.2
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.9e-170 603.2 509 78.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.4e-168 596.3 438 82.6
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.1e-168 595.9 540 72.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 7.6e-167 591.3 441 83.9
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.1e-165 587.4 450 80.7
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.7e-163 580.1 552 71.6
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.7e-163 577.8 443 81.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.1e-162 577.4 536 71.6
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.1e-162 577.4 446 76.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.5e-162 576.2 456 80.0
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 9.6e-162 574.3 440 83.0
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.6e-162 574.3 441 82.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.6e-161 573.5 589 61.0
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 2.1e-161 573.2 437 76.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 8.1e-161 571.2 436 83.0
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 8.1e-161 571.2 436 83.0
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.4e-160 570.5 443 76.7
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.4e-160 570.5 442 80.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.4e-160 569.7 439 76.5
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.4e-160 569.7 426 79.8
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 5.3e-160 568.5 450 75.3
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 6.9e-160 568.2 438 76.5
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.2e-159 567.4 443 81.3
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.6e-159 566.2 444 80.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.4e-159 565.5 439 82.0
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 7.6e-159 564.7 436 80.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 9.9e-159 564.3 437 82.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.7e-158 563.5 437 80.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.9e-158 562.8 440 76.8
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.9e-158 562.8 427 78.9
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 6.4e-158 561.6 437 76.4
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-157 560.8 439 80.6
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.1e-157 560.8 438 75.3
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.2e-157 559.3 438 75.8
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 4.2e-157 558.9 444 74.1
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 9.3e-157 557.8 445 81.8
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.1e-156 556.6 428 82.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 3.5e-156 555.8 444 79.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.0e-156 555.1 547 70.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.7e-155 553.5 452 78.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.3e-155 553.1 438 74.9
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.3e-155 553.1 438 79.0
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 2.3e-155 553.1 432 75.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 5.1e-155 552.0 441 80.0
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 5.1e-155 552.0 452 77.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 6.6e-155 551.6 445 75.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.1e-154 550.8 438 81.3
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-154 550.8 451 77.6
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.3e-154 549.3 452 77.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 9.6e-154 547.7 442 74.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.8e-153 546.2 457 70.9
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 3.6e-153 545.8 446 76.5
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 6.2e-153 545.0 443 73.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.4e-152 543.9 445 73.7
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 3.1e-152 542.7 438 79.7
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.0e-152 542.3 458 65.3
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 6.9e-152 541.6 443 73.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-151 539.3 444 78.4
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 4.5e-151 538.9 456 76.1
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 5.8e-151 538.5 394 86.3
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.6e-151 538.1 444 77.3
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-149 533.9 444 77.7
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-149 532.7 444 76.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 4.2e-149 532.3 437 75.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.3e-147 527.3 449 77.3
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.3e-147 526.6 448 71.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-146 523.9 476 67.6
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.3e-146 522.7 406 76.8
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 4.8e-145 518.8 561 56.1
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 6.2e-145 518.5 448 71.7
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.2e-145 518.5 442 75.3
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 8.1e-145 518.1 502 61.0
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.8e-144 516.9 434 75.3
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.4e-144 516.5 526 66.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-143 514.2 441 73.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 7.6e-143 511.5 402 76.9
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.3e-142 510.8 446 73.5
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.7e-142 510.4 446 73.5
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.2e-142 510.0 445 68.3
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.4e-141 507.3 440 74.5
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.4e-141 507.3 440 74.5
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.5e-141 506.5 448 73.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 3.2e-141 506.1 435 74.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-141 505.8 441 75.3
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 7.1e-141 505.0 444 73.4
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-140 504.2 441 75.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.7e-140 503.1 464 73.5
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 4.6e-140 502.3 435 75.2
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 4.6e-140 502.3 435 74.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.0e-139 501.1 440 75.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.3e-139 500.0 435 74.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.9e-139 499.2 430 74.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.9e-139 499.2 430 74.4
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-138 496.9 458 72.5
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.3e-138 495.7 438 69.2
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 5.7e-138 495.4 381 76.4
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.8e-137 493.0 443 73.8
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 9.0e-136 488.0 443 74.5
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.3e-131 474.2 424 75.0
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.3e-131 473.4 467 65.1
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.5e-130 470.7 437 68.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.9e-130 470.3 482 67.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.2e-129 466.8 445 73.7
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 8.2e-129 464.9 433 74.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 8.2e-129 464.9 356 71.9
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.2e-127 461.1 444 70.9
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.3e-126 457.6 445 65.2
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.3e-126 457.6 419 74.7
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.8e-126 456.1 399 75.4
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.4e-125 454.1 464 69.4
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.6e-116 424.1 452 61.7
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.7e-116 423.3 482 54.8
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.8e-115 420.6 453 70.0
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 6.7e-115 418.7 346 82.4
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 1.1e-114 417.9 419 65.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.7e-110 404.1 398 70.1
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.0e-106 390.6 389 65.6
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.0e-99 366.7 311 82.3
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.6e-95 354.4 453 56.7
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 3.5e-95 353.2 329 65.3
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.7e-94 350.9 344 74.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.2e-93 346.3 325 62.5
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 7.0e-88 328.9 606 45.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.7e-82 309.3 390 56.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 8.3e-81 305.4 279 59.1
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.7e-79 300.4 292 77.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.4e-74 283.1 240 65.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.1e-72 278.5 474 46.0
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.4e-59 235.0 377 40.1
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.6e-52 211.5 152 68.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 3.6e-52 210.3 131 80.2
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-48 196.8 141 67.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-47 195.3 141 66.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.7e-46 191.4 141 65.2
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.5e-45 188.3 181 56.9
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-41 174.1 168 56.0
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-40 170.2 134 60.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.3e-40 169.1 134 60.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.1e-35 155.6 95 84.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-34 150.2 171 50.3
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-34 150.2 128 58.6
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.6e-26 122.9 95 64.2
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-24 119.0 75 74.7
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-23 115.2 93 63.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.8e-20 104.4 466 24.5
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 8.2e-20 102.8 56 87.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 5.9e-18 96.7 210 32.4
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 4.6e-15 87.0 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.3e-14 85.5 71 69.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.7e-14 82.8 52 80.8
Dinv08405 Davidia involucrata HOM05D004623 ORTHO05D005100 2.5e-13 81.3 162 49.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.5e-10 72.0 57 68.4
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-08 65.1 68 54.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.5e-08 63.5 123 36.6


User provided reference genes

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