Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.6e-186 656.0 333 100.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-146 521.9 334 80.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.9e-145 518.5 335 80.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.0e-137 493.8 330 77.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.0e-129 465.7 335 73.7
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.0e-129 465.7 334 73.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.3e-126 454.9 335 71.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.5e-123 446.0 332 71.7
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.1e-123 444.5 333 70.6
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.1e-123 444.5 333 70.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.2e-122 443.7 460 57.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-122 443.0 337 71.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.6e-122 441.8 283 78.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.3e-121 440.3 330 70.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 6.7e-121 438.0 282 77.3
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.5e-120 436.8 293 77.1
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.9e-120 436.4 337 67.7
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.5e-120 436.0 325 68.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.3e-120 435.6 288 74.3
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.6e-119 433.3 288 75.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.8e-119 432.6 271 79.0
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 4.8e-119 431.8 302 73.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 4.8e-119 431.8 320 69.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 8.2e-119 431.0 297 73.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 8.2e-119 431.0 335 69.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.1e-118 430.6 333 67.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-118 430.6 333 69.1
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-118 430.3 289 74.0
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.8e-118 429.9 318 71.4
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 5.3e-118 428.3 329 69.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.9e-118 427.9 250 82.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 9.0e-118 427.6 282 75.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-117 427.2 296 73.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.2e-117 427.2 296 73.0
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.2e-117 427.2 246 83.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.0e-117 426.4 242 84.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.4e-117 425.6 321 68.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.7e-117 424.5 286 74.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-116 423.3 241 83.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.2e-116 422.9 322 66.5
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.0e-116 421.8 317 67.8
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.0e-116 421.8 282 74.8
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.0e-116 421.8 261 78.5
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 8.5e-116 421.0 319 67.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.1e-115 420.6 318 67.9
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.9e-115 419.9 336 65.8
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.5e-115 419.5 333 66.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.5e-115 419.5 328 66.8
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.5e-115 419.5 321 65.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.2e-115 418.7 336 65.5
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 7.2e-115 417.9 289 72.0
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 7.2e-115 417.9 334 64.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.2e-114 417.2 245 80.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.6e-114 416.8 335 63.6
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.6e-114 416.8 342 62.3
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.1e-114 416.4 323 66.9
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.6e-114 415.6 300 70.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.6e-114 415.6 316 66.1
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.6e-114 415.2 245 81.6
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.9e-114 414.5 323 66.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 7.9e-114 414.5 263 76.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.3e-113 412.9 243 81.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.9e-113 412.1 264 76.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 3.9e-113 412.1 263 75.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.9e-113 412.1 245 81.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 8.8e-113 411.0 345 62.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.1e-112 410.6 313 67.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-112 409.5 300 70.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.3e-112 408.7 332 65.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 5.7e-112 408.3 337 63.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 7.4e-112 407.9 248 78.2
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 7.4e-112 407.9 300 66.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 7.4e-112 407.9 247 78.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.7e-111 406.8 246 80.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.7e-111 406.8 328 65.2
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.7e-111 406.8 353 61.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.3e-111 404.8 316 67.7
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 8.2e-111 404.4 329 65.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.4e-110 402.9 332 61.1
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.4e-110 402.9 329 66.3
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 4.1e-110 402.1 332 64.5
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 7.7e-109 397.9 308 65.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.2e-108 396.4 242 76.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.9e-108 396.0 298 67.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-108 396.0 289 69.9
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.4e-107 393.7 291 69.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-106 390.6 250 74.4
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.2e-106 390.6 365 58.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.7e-106 389.4 247 73.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.7e-106 389.4 247 73.3
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.8e-105 386.7 315 65.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.8e-105 386.7 260 75.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.3e-105 386.3 244 73.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.0e-105 386.0 310 64.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.2e-103 379.8 251 74.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-101 373.6 274 70.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.5e-101 372.5 212 84.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.4e-99 364.4 333 60.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 9.4e-99 364.4 305 64.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 3.9e-97 359.0 300 62.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 6.7e-97 358.2 249 73.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.8e-95 352.1 361 54.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-94 349.4 329 61.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.3e-94 348.6 214 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.2e-90 337.4 240 65.8
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-90 337.4 216 76.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.0e-90 334.7 246 69.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.3e-89 333.2 243 70.4
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.1e-86 322.8 269 56.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.2e-84 316.6 239 66.5
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.2e-79 300.1 231 66.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.1e-75 287.7 167 86.2
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.8e-73 280.4 216 62.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.9e-68 263.1 248 52.8
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 9.5e-67 258.1 145 89.7
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.2e-66 257.7 159 78.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.0e-65 252.7 224 60.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 6.8e-65 251.9 179 69.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.0e-64 250.4 247 49.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 4.9e-63 245.7 167 70.7
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 5.4e-62 242.3 251 51.8
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.2e-61 241.1 206 64.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 8.6e-60 235.0 293 50.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-59 234.2 192 65.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.3e-57 226.9 249 42.6
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.8e-56 221.5 137 78.8
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.7e-55 220.7 130 87.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.7e-53 213.4 137 73.7
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.7e-52 210.7 207 57.5
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.1e-49 201.4 133 71.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.4e-49 201.1 187 59.9
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.8e-48 195.7 193 56.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.8e-48 195.7 167 57.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.7e-47 194.1 112 80.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.4e-46 191.0 238 42.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-45 187.6 110 82.7
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 5.1e-44 182.6 172 60.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-43 181.4 136 66.2
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-43 181.4 136 66.2
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 9.6e-43 178.3 111 72.1
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.0e-40 170.6 154 63.0
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.3e-39 167.9 237 38.8
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.8e-39 166.4 164 54.9
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-38 164.5 92 83.7
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.5e-35 153.7 170 50.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 6.2e-34 149.1 226 39.4
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 6.2e-34 149.1 80 86.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.2e-34 149.1 82 80.5
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.3e-31 141.4 240 36.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.9e-31 140.2 76 84.2
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.1e-30 135.6 76 75.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.3e-27 125.6 66 84.8
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.1e-26 122.1 63 92.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.9e-25 119.0 56 91.1
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 9.9e-24 115.2 137 55.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.4e-22 111.3 247 30.0
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.4e-22 109.4 93 60.2
CSS0011310 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.9e-21 105.5 105 61.9
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.7e-18 96.7 70 67.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.1e-17 93.6 55 74.5
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-15 87.0 143 35.7
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 8.4e-15 85.5 48 75.0
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.5e-13 80.1 61 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.4e-09 67.4 102 39.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 2.0e-08 64.3 45 62.2
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 5.0e-07 59.7 76 40.8


User provided reference genes

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