Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12675 Davidia involucrata HOM05D019788 ORTHO05D003357 1.1e-158 563.1 277 100.0
Dinv15467 Davidia involucrata HOM05D019788 ORTHO05D003357 7.6e-94 347.8 248 73.8
Dinv09271 Davidia involucrata HOM05D019788 ORTHO05D003357 3.0e-50 203.0 239 53.6
Dinv13154 Davidia involucrata HOM05D019788 ORTHO05D003357 1.4e-34 151.0 114 69.3
Dinv01557 Davidia involucrata HOM05D019788 ORTHO05D003357 7.5e-33 145.2 206 44.2
Dinv12028 Davidia involucrata HOM05D000886 ORTHO05D000525 8.5e-21 105.1 61 83.6
Atru.chr1.1368 Acer truncatum HOM05D000886 ORTHO05D000525 2.9e-13 80.1 61 62.3
Nitab4.5_0000296g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.8e-13 79.7 60 63.3
HanXRQChr15g0495511 Helianthus annuus HOM05D000886 ORTHO05D000525 8.6e-13 78.6 61 60.7
Migut.J01614 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.5e-12 77.8 69 56.5
CsaV3_3G040030 Cucumis sativus L. HOM05D000886 ORTHO05D000525 2.5e-12 77.0 60 60.0
MD14G1051900 Malus domestica HOM05D000886 ORTHO05D000525 2.5e-12 77.0 76 53.9
Nitab4.5_0011877g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.5e-12 77.0 61 60.7
ClCG10G016300 Citrullus lanatus HOM05D000886 ORTHO05D000525 3.3e-12 76.6 59 61.0
Lj8A26T46 Lonicera japonica HOM05D000886 ORTHO05D000525 4.3e-12 76.3 85 52.9
HanXRQChr15g0495501 Helianthus annuus HOM05D000886 ORTHO05D000525 7.3e-12 75.5 61 57.4
CiPaw.09G051600 Carya illinoinensis HOM05D000886 ORTHO05D000525 1.2e-11 74.7 61 62.3
Actinidia38124 Actinidia chinensis HOM05D000886 ORTHO05D000525 2.1e-11 73.9 61 59.0
Lj3P844T47 Lonicera japonica HOM05D000886 ORTHO05D000525 2.1e-11 73.9 61 60.7
Sopen11g002370 Solanum pennellii HOM05D000886 ORTHO05D000525 8.0e-11 72.0 61 55.7
PGSC0003DMG400043674 Solanum tuberosum HOM05D000886 ORTHO05D000525 8.0e-11 72.0 61 54.1
Dinv24491 Davidia involucrata HOM05D019788 ORTHO05D003357 1.0e-10 71.6 44 77.3
MD12G1053400 Malus domestica HOM05D000886 ORTHO05D000525 1.0e-10 71.6 76 51.3
CAN.G809.12 Capsicum annuum HOM05D000886 ORTHO05D000525 1.4e-10 71.2 61 57.4
Lsat_1_v5_gn_5_111240 Lactuca sativa HOM05D000886 ORTHO05D000525 3.0e-10 70.1 60 56.7
TAR374G1684 Trochodendron aralioides HOM05D000886 ORTHO05D000525 3.0e-10 70.1 61 57.4
Dinv04816 Davidia involucrata HOM05D000886 ORTHO05D000525 5.2e-10 69.3 65 50.8
Hma1.2p1_0662F.1_g198230 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 5.2e-10 69.3 61 57.4
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 6.8e-10 68.9 61 57.4
Atru.chr1.1367 Acer truncatum HOM05D000886 ORTHO05D000525 8.9e-10 68.6 61 52.5
QL07p013665 Quercus lobata HOM05D000886 ORTHO05D000525 1.2e-09 68.2 61 52.5
CAN.G809.11 Capsicum annuum HOM05D000886 ORTHO05D000525 1.5e-09 67.8 61 54.1
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.4e-09 66.6 62 56.5
Rhsim04G0069800 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.4e-09 66.6 61 55.7
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 4.4e-09 66.2 61 57.4
CSS0042968 Camellia sinensis var. sinensis HOM05D000886 ORTHO05D000525 4.4e-09 66.2 59 57.6
Potri.006G031400 Populus trichocarpa HOM05D000886 ORTHO05D000525 5.7e-09 65.9 65 52.3
Rhsim04G0069900 Rhododendron simsii HOM05D000886 ORTHO05D000525 5.7e-09 65.9 61 54.1
Nitab4.5_0005169g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.5e-09 65.5 63 57.1
Sabra06G0021000 Salix brachista HOM05D000886 ORTHO05D000525 7.5e-09 65.5 65 50.8
Haze_20280 Corylus avellana HOM05D000886 ORTHO05D000525 9.8e-09 65.1 61 54.1
Haze_20285 Corylus avellana HOM05D000886 ORTHO05D000525 9.8e-09 65.1 61 54.1
Dinv17692 Davidia involucrata HOM05D000886 ORTHO05D000525 9.8e-09 65.1 61 59.0
Hma1.2p1_1283F.1_g272790 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 9.8e-09 65.1 61 54.1
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 1.3e-08 64.7 61 57.4
Ciclev10012328m.g Citrus clementina HOM05D000886 ORTHO05D000525 1.7e-08 64.3 61 54.1
Ciclev10012747m.g Citrus clementina HOM05D000886 ORTHO05D000525 1.7e-08 64.3 61 54.1
vmacro08978 Vaccinium macrocarpon HOM05D000886 ORTHO05D000525 2.2e-08 63.9 61 54.1
Oeu064751.1 Olea europaea HOM05D000886 ORTHO05D000525 3.7e-08 63.2 61 49.2
ECA232G4885 Erigeron canadensis HOM05D000886 ORTHO05D000525 4.9e-08 62.8 61 54.1
Oeu064750.1 Olea europaea HOM05D000886 ORTHO05D000525 4.9e-08 62.8 61 47.5
Peaxi162Scf00975g00016 Petunia axillaris HOM05D000886 ORTHO05D000525 4.9e-08 62.8 61 52.5
Sed0018455 Sechium edule HOM05D000886 ORTHO05D000525 4.9e-08 62.8 57 52.6
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 6.4e-08 62.4 65 52.3
Rhsim04G0069600 Rhododendron simsii HOM05D000886 ORTHO05D000525 6.4e-08 62.4 61 54.1
Dinv03445 Davidia involucrata HOM05D000886 ORTHO05D000525 8.3e-08 62.0 57 56.1
Peaxi162Scf00975g10015 Petunia axillaris HOM05D000886 ORTHO05D000525 8.3e-08 62.0 61 52.5
SGA_v2.0_scaffold240G44131 Striga asiatica HOM05D000886 ORTHO05D000525 8.3e-08 62.0 59 50.8
Lsat_1_v5_gn_9_55720 Lactuca sativa HOM05D000886 ORTHO05D000525 1.4e-07 61.2 59 54.2
SalBow6G4799 Salvia bowleyana HOM05D000886 ORTHO05D000525 1.4e-07 61.2 62 54.8
Cc06_g20650 Coffea canephora HOM05D000886 ORTHO05D000525 1.8e-07 60.8 61 52.5
TPR.G1559 Trifolium pratense HOM05D000886 ORTHO05D000525 1.8e-07 60.8 61 50.8
GSVIVG01025807001 Vitis vinifera HOM05D000886 ORTHO05D000525 1.8e-07 60.8 51 56.9
ECA232G0318 Erigeron canadensis HOM05D000886 ORTHO05D000525 2.4e-07 60.5 61 50.8
Actinidia39320 Actinidia chinensis HOM05D000886 ORTHO05D000525 4.1e-07 59.7 65 47.7
ECA232G0102 Erigeron canadensis HOM05D000886 ORTHO05D000525 5.4e-07 59.3 60 53.3
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 5.4e-07 59.3 63 52.4
Peaxi162Scf00011g01434 Petunia axillaris HOM05D000886 ORTHO05D000525 5.4e-07 59.3 45 64.4
TAR623G1664 Trochodendron aralioides HOM05D000886 ORTHO05D000525 5.4e-07 59.3 61 50.8
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 7.0e-07 58.9 54 53.7
Lj2A411T32 Lonicera japonica HOM05D000886 ORTHO05D000525 7.0e-07 58.9 61 50.8
Peaxi162Scf00016g00923 Petunia axillaris HOM05D000886 ORTHO05D000525 7.0e-07 58.9 60 46.7
TWI53G1169 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 7.0e-07 58.9 61 49.2
Dinv09707 Davidia involucrata HOM05D000886 ORTHO05D000525 9.2e-07 58.5 45 62.2
Migut.I00460 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.2e-06 58.2 58 51.7
Peaxi162Scf00877g00007 Petunia axillaris HOM05D000886 ORTHO05D000525 1.2e-06 58.2 61 47.5
Rhsim04G0117500 Rhododendron simsii HOM05D000886 ORTHO05D000525 1.2e-06 58.2 64 50.0
TAR623G1218 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.2e-06 58.2 65 49.2
TAR623G1595 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.2e-06 58.2 63 47.6
Oeu064753.1 Olea europaea HOM05D000886 ORTHO05D000525 2.0e-06 57.4 61 45.9
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 4.6e-06 56.2 61 47.5
Sopen01g045820 Solanum pennellii HOM05D000886 ORTHO05D000525 5.9e-06 55.8 48 58.3
FvH4_3g40510 Fragaria vesca HOM05D000886 ORTHO05D000525 7.8e-06 55.5 62 50.0
Lsat_1_v5_gn_9_55760 Lactuca sativa HOM05D000886 ORTHO05D000525 7.8e-06 55.5 61 42.6
Solyc01g103460.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 7.8e-06 55.5 48 58.3


User provided reference genes

Program Settings