Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 0.0e+00 1083.2 551 100.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 3.2e-277 958.0 551 89.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 5.6e-266 920.6 553 84.6
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.1e-250 869.8 555 80.7
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.0e-247 859.0 552 79.0
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.6e-244 847.8 558 79.0
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.0e-243 845.1 517 83.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 9.7e-242 840.1 553 79.7
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 6.3e-241 837.4 556 79.9
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 8.2e-241 837.0 552 77.2
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.8e-240 835.9 565 78.2
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 5.3e-240 834.3 554 78.2
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.6e-239 832.0 605 72.1
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 7.7e-239 830.5 560 78.4
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 2.9e-238 828.6 556 79.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.8e-238 828.2 557 77.2
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 3.8e-238 828.2 550 77.1
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.8e-238 828.2 553 78.5
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 9.4e-237 823.5 556 77.7
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.0e-235 820.1 556 78.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.1e-234 816.6 555 76.6
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-233 813.1 557 76.5
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 3.7e-233 811.6 554 76.9
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.5e-231 806.2 554 75.3
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.0e-230 803.5 553 77.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 8.5e-230 800.4 553 74.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.5e-229 798.9 552 77.0
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.2e-229 798.5 553 74.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.2e-229 798.1 552 74.3
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 9.4e-229 797.0 553 77.0
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 6.1e-228 794.3 551 73.9
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.8e-227 792.7 553 74.5
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.8e-227 792.7 552 74.5
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.9e-227 791.6 559 76.9
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 3.9e-227 791.6 553 74.1
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 8.8e-227 790.4 551 75.0
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.3e-222 776.5 560 73.8
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.5e-221 773.1 560 73.6
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 6.1e-220 767.7 550 71.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.3e-219 765.8 558 72.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 4.0e-219 765.0 635 67.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.6e-218 762.3 549 71.4
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.4e-216 756.5 558 72.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.1e-216 755.0 550 71.5
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.1e-216 753.8 559 72.3
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.8e-214 748.4 550 70.9
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 3.2e-213 745.3 614 69.1
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.2e-213 745.3 568 69.2
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 4.7e-212 741.5 556 73.2
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 8.0e-212 740.7 555 70.8
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.8e-211 739.6 555 71.2
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.3e-211 739.2 550 70.2
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.5e-210 736.5 557 68.4
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 5.7e-210 734.6 552 69.4
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.8e-209 732.3 553 72.3
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.7e-209 731.9 555 70.8
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 7.7e-207 724.2 559 69.9
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.5e-205 719.9 555 72.8
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 3.2e-205 718.8 555 69.9
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.2e-205 718.4 543 72.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.1e-204 714.5 692 58.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 8.0e-204 714.1 564 67.6
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 8.8e-203 710.7 556 69.8
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.5e-202 709.9 553 69.6
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.7e-201 706.4 565 67.8
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.2e-201 706.1 691 58.2
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 6.3e-201 704.5 551 71.0
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 8.3e-201 704.1 552 69.0
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 9.2e-200 700.7 549 71.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 9.2e-200 700.7 577 65.7
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 9.2e-200 700.7 578 65.9
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.2e-199 700.3 585 65.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.0e-199 699.5 541 71.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.7e-199 699.1 538 69.5
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 5.9e-199 698.0 560 69.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.3e-198 696.8 467 76.4
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 5.2e-195 684.9 559 68.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-192 676.8 467 71.5
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.2e-191 673.7 637 59.2
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 7.8e-191 671.0 569 66.8
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 3.9e-190 668.7 583 62.8
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.1e-188 662.9 565 65.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.3e-187 659.4 450 77.1
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.8e-187 657.9 516 69.4
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.8e-187 657.9 567 64.9
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.9e-182 642.1 562 66.2
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 9.5e-181 637.5 565 65.7
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.2e-178 630.6 568 63.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.6e-178 629.4 577 63.6
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.6e-178 629.4 572 63.5
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 4.4e-178 628.6 571 64.3
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 6.4e-177 624.8 573 63.7
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 3.2e-176 622.5 573 63.0
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.1e-176 622.1 576 62.8
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 5.6e-173 611.7 573 61.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.2e-172 610.5 573 62.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 5.8e-170 601.7 531 62.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 6.4e-169 598.2 559 61.5
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.7e-167 592.8 558 60.4
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.3e-166 590.5 556 62.2
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.8e-161 572.4 576 60.4
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 6.4e-161 571.6 576 60.4
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 6.4e-161 571.6 576 60.4
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.3e-157 558.9 575 57.9
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.3e-157 558.9 429 71.6
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.3e-156 557.4 575 57.9
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 5.1e-150 535.4 576 54.7
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.9e-149 533.5 417 69.5
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 6.2e-148 528.5 583 53.7
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 2.6e-146 523.1 563 54.4
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 5.3e-139 498.8 564 53.5
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.2e-136 489.6 557 53.0
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 5.1e-134 482.3 556 50.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.1e-133 481.1 393 66.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 7.7e-106 388.7 566 45.2
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 9.4e-104 381.7 568 43.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.0e-102 378.3 428 53.7
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 7.2e-96 355.5 498 45.4
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 3.5e-90 336.7 310 61.6
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 8.3e-84 315.5 361 49.3
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 3.0e-65 253.8 469 40.5
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 1.2e-53 215.3 264 44.3
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.0e-41 174.1 165 58.8
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 7.4e-32 142.9 88 81.8
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.1e-26 124.8 87 74.7
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.6e-24 115.9 125 54.4
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.2e-21 109.0 84 67.9
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.5e-19 101.3 73 71.2
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 4.2e-19 100.5 200 31.0
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 7.9e-18 96.3 237 30.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.5e-16 92.0 231 31.6
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.3e-15 89.0 222 32.0
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.0e-13 81.6 178 32.0
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 8.5e-12 76.3 63 69.8
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 4.8e-07 60.5 47 66.0
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.1e-06 57.4 101 45.5


User provided reference genes

Program Settings