Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.0e-108 395.2 201 100.0
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.1e-83 313.5 203 78.8
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.8e-82 308.9 201 80.1
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 8.2e-82 307.4 201 77.6
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 5.3e-81 304.7 201 76.6
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 8.5e-79 297.4 180 85.6
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 8.0e-77 290.8 249 63.9
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.0e-76 290.4 189 76.2
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 2.4e-73 279.3 186 76.3
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 2.0e-72 276.2 191 72.8
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 2.0e-72 276.2 195 71.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.5e-72 275.4 198 71.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 5.9e-72 274.6 194 72.2
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 7.7e-72 274.2 184 75.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.7e-71 273.1 200 71.0
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 2.2e-71 272.7 200 69.5
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 2.9e-71 272.3 198 70.2
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 8.5e-71 270.8 195 70.3
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.5e-70 269.2 200 71.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 5.5e-70 268.1 186 75.8
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 7.2e-70 267.7 204 66.7
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 9.4e-70 267.3 187 73.3
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.2e-69 266.9 198 70.7
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.7e-69 265.8 192 70.8
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 8.0e-69 264.2 201 68.7
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.4e-68 263.5 199 70.4
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 1.8e-68 263.1 183 72.7
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 2.3e-68 262.7 226 65.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 5.2e-68 261.5 187 73.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 8.8e-68 260.8 201 64.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-67 260.0 187 67.4
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 2.6e-67 259.2 201 63.7
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 4.4e-67 258.5 201 64.2
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 5.7e-67 258.1 187 71.7
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 5.7e-67 258.1 202 66.8
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 7.5e-67 257.7 186 73.1
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 7.5e-67 257.7 187 71.7
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 1.7e-66 256.5 187 71.7
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 2.2e-66 256.1 192 70.3
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 3.7e-66 255.4 201 70.1
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.7e-66 255.4 202 64.9
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 4.8e-66 255.0 187 70.6
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.8e-66 255.0 202 65.8
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 8.3e-66 254.2 185 68.1
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.1e-65 253.8 222 61.7
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.4e-65 252.7 201 65.2
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 3.1e-65 252.3 175 68.6
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 3.1e-65 252.3 208 63.5
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 5.4e-65 251.5 185 69.7
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 9.1e-65 250.8 197 67.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.2e-64 250.4 202 66.8
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 2.0e-64 249.6 194 65.5
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 3.5e-64 248.8 200 65.0
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 7.7e-64 247.7 195 64.6
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 2.3e-63 246.1 201 64.2
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 9.5e-62 240.7 201 61.7
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.6e-61 240.0 194 62.9
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.6e-61 240.0 188 62.8
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 2.1e-61 239.6 188 62.8
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 2.8e-61 239.2 195 63.6
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 4.7e-61 238.4 201 61.2
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.0e-60 237.3 200 59.5
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 3.0e-60 235.7 205 60.5
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 3.0e-60 235.7 176 64.2
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 5.2e-60 235.0 181 65.2
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 6.8e-60 234.6 188 66.5
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 1.5e-59 233.4 201 62.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 1.5e-59 233.4 204 59.3
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 2.6e-59 232.6 201 61.2
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 9.8e-59 230.7 194 60.3
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 3.1e-57 225.7 209 57.9
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 5.4e-57 224.9 199 57.3
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 9.2e-57 224.2 187 62.6
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.7e-56 222.6 180 61.1
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 3.5e-56 222.2 180 61.1
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 4.5e-56 221.9 194 59.3
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.3e-55 220.3 187 61.5
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 5.6e-54 214.9 194 58.8
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 9.5e-54 214.2 183 62.3
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 6.1e-53 211.5 164 62.8
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.7e-50 203.4 196 55.1
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 2.2e-50 203.0 188 55.9
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 3.7e-50 202.2 197 54.8
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.7e-50 202.2 176 60.8
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 4.9e-50 201.8 194 57.2
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 4.1e-49 198.7 185 56.2
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 9.2e-49 197.6 173 60.1
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.7e-47 193.4 203 55.2
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.7e-47 193.4 189 55.6
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.3e-47 193.0 173 58.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 5.0e-47 191.8 176 57.4
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 8.6e-47 191.0 176 58.5
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 8.6e-47 191.0 176 58.0
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.9e-46 189.9 203 54.7
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.9e-46 189.9 203 54.7
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 4.3e-46 188.7 190 55.3
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 7.3e-46 188.0 198 55.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 9.5e-46 187.6 190 54.7
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 2.1e-45 186.4 201 54.2
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 4.7e-45 185.3 198 55.1
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 8.0e-45 184.5 189 51.9
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 7.5e-43 177.9 185 52.4
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 8.3e-42 174.5 165 53.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 4.1e-41 172.2 124 70.2
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 9.2e-41 171.0 176 54.0
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.7e-39 166.8 185 46.5
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.5e-38 163.7 127 63.8
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 6.8e-36 154.8 198 48.5
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 6.8e-36 154.8 104 73.1
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 8.6e-31 137.9 108 65.7
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 8.1e-29 131.3 99 68.7
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 2.3e-23 113.2 186 40.9
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 2.5e-22 109.8 191 36.6
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 2.1e-21 106.7 190 34.7
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 8.4e-18 94.7 205 34.1
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 6.4e-10 68.6 196 26.0
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.2e-08 64.3 39 71.8


User provided reference genes

Program Settings