Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.4e-99 366.3 184 100.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 4.0e-91 338.2 186 93.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.4e-80 303.1 187 86.1
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.2e-80 302.0 186 83.3
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.4e-80 301.2 186 82.3
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.6e-79 299.7 187 82.9
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.1e-79 299.3 183 81.4
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.9e-78 295.0 181 83.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.5e-77 293.1 186 81.7
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.2e-76 290.0 186 80.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.8e-75 284.3 186 78.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.1e-72 276.9 186 79.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.4e-72 275.8 186 75.3
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.2e-71 273.5 185 77.8
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.3e-70 269.2 182 78.6
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 6.6e-70 267.7 186 73.7
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.5e-69 266.5 189 76.2
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.3e-69 265.0 186 73.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 4.3e-69 265.0 186 74.2
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 5.6e-69 264.6 168 81.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 5.6e-69 264.6 192 75.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.3e-69 264.2 190 73.7
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-68 263.5 189 73.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.7e-68 261.5 186 75.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.8e-67 259.6 186 73.1
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.0e-67 258.5 186 72.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.0e-67 258.5 194 73.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.0e-67 258.5 183 75.4
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 5.2e-67 258.1 140 93.6
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 8.9e-67 257.3 186 73.7
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 8.9e-67 257.3 189 71.4
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.9e-67 257.3 184 73.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 5.8e-66 254.6 181 73.5
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.8e-66 254.6 173 77.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.2e-65 252.7 169 78.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.4e-65 251.1 187 72.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.1e-64 250.4 185 71.9
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.9e-64 249.6 178 73.6
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.4e-64 249.2 175 74.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.4e-64 249.2 175 74.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-64 248.4 187 71.1
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.4e-64 248.1 187 71.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 7.1e-64 247.7 190 70.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.6e-63 246.5 183 69.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 3.5e-63 245.4 194 68.6
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 7.8e-63 244.2 175 75.4
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 7.8e-63 244.2 186 69.4
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.8e-63 244.2 166 75.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.0e-62 243.8 177 74.0
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.0e-62 243.8 145 83.4
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.3e-62 243.4 175 73.1
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.3e-62 243.4 191 70.7
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 3.0e-62 242.3 181 72.4
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.9e-62 241.9 165 76.4
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.1e-61 240.4 187 70.1
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.9e-61 239.6 186 69.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.5e-61 239.2 183 71.0
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 4.8e-60 235.0 186 68.3
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.2e-60 234.6 175 71.4
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.4e-59 233.4 163 74.8
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.4e-59 232.6 193 67.9
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.1e-59 232.3 186 67.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.1e-59 232.3 181 69.6
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 5.8e-58 228.0 178 68.5
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.8e-58 228.0 182 67.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 7.6e-58 227.6 146 76.0
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.6e-58 227.6 187 66.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.9e-58 227.3 187 66.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.3e-57 226.9 182 67.0
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.7e-57 226.5 187 65.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.4e-57 224.6 175 70.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.9e-56 223.0 172 69.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.9e-56 223.0 206 63.6
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 9.3e-56 220.7 185 65.4
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.7e-55 219.2 160 71.9
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.7e-55 219.2 160 71.9
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.5e-55 218.8 160 71.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 4.6e-55 218.4 174 71.3
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 6.0e-55 218.0 182 65.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.0e-55 218.0 182 65.9
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.3e-54 216.9 170 70.6
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.1e-54 214.9 162 72.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.1e-53 213.8 186 64.5
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.1e-53 213.8 173 68.8
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.1e-53 213.8 189 64.6
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.9e-53 213.0 175 65.1
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.6e-53 211.5 174 64.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.3e-52 210.3 175 69.1
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.3e-52 210.3 184 65.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-52 209.1 178 65.2
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.8e-52 209.1 186 65.6
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 2.8e-52 209.1 131 81.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 4.8e-52 208.4 216 57.9
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 8.1e-52 207.6 183 65.0
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 8.1e-52 207.6 169 69.8
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.1e-51 207.2 191 61.3
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 6.9e-51 204.5 178 65.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.2e-50 203.8 179 63.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.2e-50 203.8 152 69.7
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 5.8e-50 201.4 188 63.8
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-49 199.5 174 62.6
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.9e-49 199.1 179 61.5
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.9e-49 199.1 187 61.0
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.8e-49 198.7 181 61.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.9e-49 198.4 176 65.9
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 3.2e-48 195.7 150 68.7
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.3e-46 190.3 167 64.7
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.8e-46 189.9 128 75.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.0e-46 189.1 157 65.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 6.7e-46 188.0 138 71.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.1e-45 187.2 139 70.5
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.3e-45 185.3 184 59.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.6e-45 184.9 133 73.7
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 9.6e-45 184.1 193 58.0
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 9.6e-45 184.1 159 61.6
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 9.6e-45 184.1 139 72.7
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.8e-44 182.6 155 65.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 8.1e-44 181.0 130 71.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.8e-43 179.9 185 59.5
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 4.0e-43 178.7 171 59.1
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 6.9e-43 177.9 136 69.1
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.2e-42 177.2 132 73.5
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-42 177.2 177 58.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.5e-42 176.8 180 55.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.0e-42 176.4 158 61.4
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.4e-42 175.6 146 68.5
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.5e-42 175.3 160 63.1
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.5e-42 175.3 154 62.3
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.6e-42 174.5 127 75.6
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.1e-40 170.6 137 65.0
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 7.1e-40 167.9 147 61.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 7.1e-40 167.9 103 78.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-39 166.8 114 71.9
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.1e-39 166.4 120 71.7
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 2.7e-39 166.0 103 78.6
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.7e-39 166.0 156 57.7
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.3e-38 163.7 150 59.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-38 162.9 112 68.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.9e-38 162.2 114 70.2
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.1e-38 161.8 143 63.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 6.7e-38 161.4 125 67.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.5e-37 160.2 125 66.4
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.5e-37 160.2 125 66.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.9e-37 159.8 98 77.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.9e-37 159.8 119 68.1
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 7.4e-37 157.9 113 69.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.6e-36 156.8 102 76.5
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.8e-36 156.0 173 53.2
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.7e-36 155.6 88 86.4
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.7e-36 155.6 123 63.4
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.8e-35 153.3 125 64.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 2.6e-34 149.4 148 58.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.6e-31 138.7 112 67.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.3e-30 137.1 84 78.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.3e-30 137.1 84 78.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 3.0e-30 136.0 175 50.3
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 5.3e-27 125.2 81 72.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.4e-26 122.5 143 47.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 6.5e-25 118.2 133 52.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 9.4e-24 114.4 94 70.2
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 5.7e-21 105.1 58 84.5
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.4e-16 90.5 98 48.0
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.9e-14 82.4 176 37.5
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.1e-11 72.8 109 41.3
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.1e-11 72.8 40 85.0
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.7e-10 68.2 129 34.9
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.5e-08 63.9 43 67.4


User provided reference genes

Program Settings