Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 3.6e-277 957.6 473 100.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.8e-181 639.0 593 58.2
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.8e-181 639.0 593 58.3
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 2.2e-173 612.8 595 57.0
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.6e-171 605.9 593 54.8
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.6e-168 595.5 609 53.0
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 7.9e-168 594.3 586 54.9
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 5.7e-166 588.2 593 54.1
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.3e-165 587.0 593 54.3
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 6.3e-165 584.7 593 52.8
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 3.1e-164 582.4 594 53.4
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 4.5e-163 578.6 595 54.3
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 3.8e-162 575.5 552 55.3
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.5e-161 572.8 620 51.9
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 3.0e-159 565.8 484 65.3
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.9e-159 565.5 593 52.3
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.3e-157 560.5 589 52.6
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.2e-157 559.7 592 51.0
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.8e-156 556.6 593 51.1
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 3.1e-156 555.8 593 51.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.3e-156 555.1 592 49.8
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.5e-155 552.0 592 49.8
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 2.2e-154 549.7 592 50.7
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 2.9e-154 549.3 595 50.3
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-153 547.0 592 49.8
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 1.5e-153 547.0 592 49.2
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.5e-153 546.2 535 53.6
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.7e-152 542.7 579 50.9
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 8.0e-152 541.2 590 50.8
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 8.0e-152 541.2 587 50.6
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.0e-151 540.8 590 50.5
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 3.0e-151 539.3 591 48.9
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.5e-150 537.0 592 49.5
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 2.0e-150 536.6 589 50.3
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.0e-150 536.6 599 49.4
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.3e-150 535.8 595 49.7
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 4.4e-150 535.4 593 48.9
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 9.7e-150 534.3 593 49.7
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 9.7e-150 534.3 593 49.7
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.7e-149 533.5 576 50.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 2.8e-149 532.7 599 48.6
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 6.3e-149 531.6 593 48.9
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.4e-148 530.4 590 50.8
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 7.0e-148 528.1 606 48.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.2e-147 527.3 594 49.3
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.6e-147 526.9 593 49.7
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.3e-146 523.9 593 48.6
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.7e-146 523.5 594 49.0
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 8.5e-146 521.2 594 48.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.1e-145 520.8 592 48.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.1e-145 520.8 540 53.1
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.1e-145 520.8 591 48.6
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.9e-145 520.0 594 48.5
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 4.2e-145 518.8 592 48.0
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 5.5e-145 518.5 592 48.3
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 9.4e-145 517.7 590 49.3
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 4.7e-144 515.4 593 48.2
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 8.0e-144 514.6 603 47.6
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.0e-143 514.2 592 49.7
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 3.0e-143 512.7 592 47.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.6e-142 509.6 592 46.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 4.4e-142 508.8 592 47.1
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 5.7e-142 508.4 599 47.7
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 5.7e-142 508.4 596 46.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 9.8e-142 507.7 593 46.7
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.3e-141 507.3 594 46.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-141 507.3 594 46.6
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.2e-141 506.5 593 46.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.7e-141 505.8 595 49.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 6.3e-141 505.0 592 46.5
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.4e-140 503.8 593 46.4
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.4e-140 503.1 595 47.9
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 5.4e-140 501.9 594 46.8
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.2e-139 500.7 592 45.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 2.0e-139 500.0 594 46.1
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.3e-138 496.5 605 45.6
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 5.0e-138 495.4 594 48.7
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-137 493.4 589 48.4
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 2.3e-135 486.5 605 44.8
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 8.9e-135 484.6 592 44.9
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.7e-133 479.2 559 47.4
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.4e-132 477.2 562 48.9
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.7e-131 473.0 589 44.1
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 7.5e-126 454.9 593 43.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.3e-122 443.4 502 50.6
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 6.8e-119 431.8 591 41.8
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.1e-116 424.5 627 42.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-114 417.2 589 40.4
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 3.9e-114 416.0 593 41.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.7e-112 409.1 578 41.3
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 2.9e-109 399.8 514 44.0
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.1e-105 387.9 631 39.5
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.2e-101 373.6 562 42.0
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.6e-88 330.9 303 55.4
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.1e-81 308.1 302 54.3
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 6.2e-80 302.4 305 53.1
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 2.2e-77 293.9 149 91.3
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.1e-75 287.3 148 87.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.7e-75 287.0 183 75.4
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.5e-73 280.4 333 46.2
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.2e-68 263.1 308 47.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.3e-65 253.4 149 77.2
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.2e-61 240.7 148 73.6
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.2e-59 235.0 149 69.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.7e-56 223.4 170 65.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.1e-55 221.9 149 67.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.3e-55 219.5 104 94.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 6.5e-53 212.6 106 87.7
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 2.6e-49 200.7 149 63.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 7.0e-47 192.6 212 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 5.5e-44 183.0 149 62.4
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.6e-43 181.4 302 38.4
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.7e-37 161.4 280 37.1
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 3.6e-35 153.7 137 60.6
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 4.4e-33 146.7 161 44.1
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.2e-30 138.7 312 32.1
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.2e-27 128.6 86 72.1
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 4.7e-27 126.7 58 89.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.6e-21 106.3 72 70.8
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.0e-17 94.7 44 88.6
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.7e-16 91.7 102 51.0
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 2.2e-16 91.3 102 50.0
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 6.3e-16 89.7 74 63.5
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.1e-15 89.0 102 49.0
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.8e-15 88.2 75 61.3
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 7.0e-15 86.3 102 49.0
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.3e-13 81.3 122 40.2
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 6.6e-13 79.7 150 32.7
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.5e-12 77.8 45 71.1
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 7.3e-12 76.3 99 44.4
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 9.5e-12 75.9 95 43.2
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.2e-11 75.5 95 44.2
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.8e-10 71.6 95 44.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 9.8e-09 65.9 128 32.0
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 2.2e-08 64.7 128 27.3


User provided reference genes

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