Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 0.0e+00 1878.6 992 100.0
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 0.0e+00 1083.9 805 71.6
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 0.0e+00 1075.5 804 71.5
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 0.0e+00 1075.1 772 71.5
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 5.7e-309 1064.3 615 83.6
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 4.8e-308 1061.2 766 71.3
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 3.1e-307 1058.5 764 71.3
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 9.1e-307 1057.0 762 70.9
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 7.7e-306 1053.9 764 70.8
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 2.7e-303 1045.4 742 71.3
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 1.0e-302 1043.5 765 70.8
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 1.0e-302 1043.5 843 65.4
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 1.1e-301 1040.0 751 68.8
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 1.3e-300 1036.6 795 68.6
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 4.8e-300 1034.6 841 65.3
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 4.8e-300 1034.6 841 65.3
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 6.3e-300 1034.2 772 70.1
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.4e-299 1032.3 745 71.0
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 9.1e-299 1030.4 803 67.0
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 1.2e-298 1030.0 815 67.5
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.5e-298 1029.6 761 71.5
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 1.7e-297 1026.2 766 67.6
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.7e-297 1026.2 818 68.1
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 2.9e-297 1025.4 733 69.3
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 1.1e-296 1023.5 787 66.1
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 8.0e-295 1017.3 734 71.9
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 1.8e-294 1016.1 845 63.9
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 9.7e-293 1010.4 843 66.5
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 2.2e-292 1009.2 752 66.4
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 2.2e-292 1009.2 756 70.2
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.8e-292 1008.8 755 70.1
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 9.1e-291 1003.8 681 72.5
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-288 996.9 806 65.3
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 1.9e-288 996.1 860 64.2
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 3.2e-288 995.3 751 69.6
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 5.5e-288 994.6 804 65.0
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 7.2e-288 994.2 751 69.6
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 1.7e-284 983.0 729 70.4
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 3.0e-278 962.2 686 71.3
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 5.7e-277 958.0 746 67.7
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.8e-275 953.0 784 63.3
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 1.2e-271 940.3 785 65.5
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 4.7e-271 938.3 804 63.7
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 2.3e-270 936.0 740 66.6
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.2e-269 933.7 688 70.8
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 2.0e-269 932.9 780 63.8
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 7.5e-269 931.0 754 65.1
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 7.5e-269 931.0 809 61.6
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 7.5e-269 931.0 810 61.7
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.7e-268 929.9 597 74.9
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 6.3e-268 927.9 690 67.1
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.4e-267 926.8 769 63.7
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 3.2e-267 925.6 788 64.3
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 5.4e-267 924.9 763 64.1
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 5.4e-267 924.9 774 64.6
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 3.5e-266 922.2 688 71.1
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 7.8e-266 921.0 776 64.4
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 2.9e-265 919.1 808 59.5
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 3.9e-265 918.7 820 61.8
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 6.6e-265 917.9 761 63.2
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 7.3e-264 914.4 767 64.9
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 3.6e-263 912.1 781 62.0
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 5.2e-262 908.3 708 66.7
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 5.2e-262 908.3 752 61.8
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 2.9e-260 902.5 778 62.5
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 7.0e-259 897.9 822 61.3
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 4.6e-258 895.2 705 66.8
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 8.6e-257 891.0 850 60.5
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.8e-255 885.9 870 57.7
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 4.7e-255 885.2 774 60.2
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 5.2e-254 881.7 809 59.7
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 9.8e-253 877.5 773 62.7
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 6.0e-250 868.2 826 58.5
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 1.7e-249 866.7 706 64.0
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 2.3e-249 866.3 783 60.5
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 3.0e-249 865.9 744 62.2
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 6.6e-249 864.8 744 63.4
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.5e-248 862.8 726 63.1
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 7.3e-248 861.3 740 63.5
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 1.8e-246 856.7 783 60.7
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 9.2e-243 844.3 742 57.7
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 2.1e-239 833.2 828 56.2
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.8e-238 830.1 826 55.7
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 6.0e-234 815.1 729 59.8
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 3.6e-231 805.8 813 56.3
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.4e-219 767.3 823 54.7
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.5e-216 757.3 616 68.2
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 8.4e-204 714.9 550 65.6
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 4.1e-182 642.9 773 49.7
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 8.5e-164 582.0 343 76.4
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 6.1e-162 575.9 524 64.1
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 8.8e-161 572.0 381 69.8
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 4.5e-157 559.7 467 57.0
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 8.6e-156 555.4 570 48.9
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 7.8e-149 532.3 493 58.6
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 9.5e-147 525.4 402 68.9
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 5.2e-145 519.6 563 50.3
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.6e-133 479.9 264 80.3
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 2.6e-112 411.0 346 56.1
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.2e-110 404.1 407 51.4
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 4.5e-104 383.6 395 60.8
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 8.1e-98 362.8 445 51.9
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 2.4e-97 361.3 196 84.7
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 9.0e-97 359.4 188 85.1
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 3.5e-93 347.4 354 50.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 6.5e-71 273.5 185 65.9
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 1.3e-66 259.2 320 57.8
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-33 149.8 117 62.4
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.6e-32 146.0 83 75.9
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-32 143.7 350 29.4
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 3.9e-23 114.8 249 41.8
Dinv30367 Davidia involucrata HOM05D002995 ORTHO05D002742 2.8e-21 108.6 64 82.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.0e-19 102.4 77 63.6
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.4e-19 101.7 161 35.4
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 4.1e-17 94.7 72 51.4
Lj5C40T31 Lonicera japonica HOM05D002995 ORTHO05D003319 3.6e-13 81.6 109 45.0
TAR413G0002 Trochodendron aralioides HOM05D002995 ORTHO05D003319 1.4e-12 79.7 76 57.9
RcHm_v2.0_Chr2g0144551 Rosa chinensis HOM05D002995 ORTHO05D003319 6.8e-12 77.4 79 51.9
Dinv36799 Davidia involucrata HOM05D002995 ORTHO05D003319 2.6e-11 75.5 113 44.2
CSS0025029 Camellia sinensis var. sinensis HOM05D002995 ORTHO05D003319 3.4e-11 75.1 76 52.6
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 4.4e-11 74.7 107 48.6
FvH4_6g34220 Fragaria vesca HOM05D002995 ORTHO05D003319 7.6e-11 73.9 79 54.4
Cfa003552 Carpinus fangiana HOM05D002995 ORTHO05D003319 2.4e-09 68.9 82 48.8
Nn6g35558 Nelumbo nucifera HOM05D002995 ORTHO05D003319 2.4e-09 68.9 113 39.8
FAN05G1863 Fragaria x ananassa HOM05D002995 ORTHO05D003319 3.2e-09 68.6 77 48.1
Actinidia35445 Actinidia chinensis HOM05D007000 ORTHO05D030830 1.6e-08 66.2 127 51.2
MD09G1187300 Malus domestica HOM05D002995 ORTHO05D003319 1.6e-08 66.2 81 45.7
QL05p009393 Quercus lobata HOM05D002995 ORTHO05D003319 2.7e-08 65.5 78 51.3
vmacro22222 Vaccinium macrocarpon HOM05D002995 ORTHO05D003319 3.5e-08 65.1 74 55.4
Rhsim08G0236500 Rhododendron simsii HOM05D002995 ORTHO05D003319 6.0e-08 64.3 111 40.5
Prupe.3G044600 Prunus persica HOM05D002995 ORTHO05D003319 1.3e-07 63.2 76 50.0
QL05p009417 Quercus lobata HOM05D002995 ORTHO05D003319 2.3e-07 62.4 78 50.0
Dinv42353 Davidia involucrata HOM05D002995 ORTHO05D003319 3.9e-07 61.6 100 43.0
Manes.04G142400 Manihot esculenta HOM05D002995 ORTHO05D003319 3.9e-07 61.6 52 57.7
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 3.9e-07 61.6 59 47.5
Hma1.2p1_0291F.1_g115380 Hydrangea macrophylla HOM05D002995 ORTHO05D003319 6.6e-07 60.8 83 44.6
CiPaw.01G221600 Carya illinoinensis HOM05D002995 ORTHO05D003319 2.5e-06 58.9 107 42.1
MELO3C024371.2 Cucumis melo HOM05D002995 ORTHO05D003319 2.5e-06 58.9 111 40.5
MD17G1172100 Malus domestica HOM05D002995 ORTHO05D003319 2.5e-06 58.9 75 52.0
CANSAT56G2784 Cannabis sativa HOM05D002995 ORTHO05D003319 4.3e-06 58.2 73 49.3
Rhsim05G0013900 Rhododendron simsii HOM05D002995 ORTHO05D003319 4.3e-06 58.2 78 46.2
CsaV3_7G034620 Cucumis sativus L. HOM05D002995 ORTHO05D003319 5.6e-06 57.8 112 40.2
FAN09G3175 Fragaria x ananassa HOM05D002995 ORTHO05D003319 5.6e-06 57.8 52 55.8
Gohir.D04G009000 Gossypium hirsutum HOM05D002995 ORTHO05D003319 9.6e-06 57.0 72 50.0


User provided reference genes

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