Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 4.3e-158 561.2 273 100.0
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 2.8e-93 345.9 272 65.1
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 7.7e-91 337.8 273 60.8
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 1.8e-87 326.6 271 62.0
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 4.1e-84 315.5 270 57.4
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 1.6e-83 313.5 274 58.4
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 1.3e-82 310.5 271 56.5
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 2.9e-82 309.3 274 57.7
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 3.8e-82 308.9 270 56.7
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 1.1e-81 307.4 270 59.3
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 3.6e-80 302.4 272 56.2
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 4.7e-80 302.0 271 56.5
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 2.3e-79 299.7 273 54.6
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 2.3e-79 299.7 215 64.2
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 4.4e-78 295.4 267 58.4
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 4.4e-78 295.4 246 62.2
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 2.2e-77 293.1 273 55.7
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 9.2e-76 287.7 272 53.7
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 2.9e-74 282.7 257 56.0
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 4.3e-73 278.9 273 53.8
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.6e-72 276.9 273 53.8
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 4.7e-72 275.4 270 50.7
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 2.2e-69 266.5 272 51.5
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 6.4e-69 265.0 273 52.0
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 7.8e-67 258.1 250 54.4
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 3.0e-66 256.1 273 50.5
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 2.8e-64 249.6 285 46.7
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 3.6e-64 249.2 267 48.7
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 6.2e-64 248.4 266 48.5
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 1.1e-63 247.7 268 50.0
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 3.7e-61 239.2 278 45.7
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 3.7e-61 239.2 276 50.4
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 2.4e-60 236.5 276 50.7
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 3.3e-57 226.1 263 47.5
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 5.2e-55 218.8 272 45.2
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 5.8e-54 215.3 275 45.1
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 5.6e-49 198.7 276 42.8
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-44 183.7 156 64.1
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 1.3e-40 171.0 272 40.4
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.2e-35 154.5 236 40.3
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 6.6e-34 148.7 96 71.9
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 2.5e-33 146.7 269 38.3
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 6.2e-32 142.1 271 36.2
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 1.1e-31 141.4 95 61.1
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 4.0e-31 139.4 123 52.0
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 4.0e-31 139.4 118 53.4
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 5.3e-31 139.0 98 63.3
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.2e-30 137.9 271 35.4
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 5.8e-30 135.6 99 64.6
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 1.1e-25 121.3 102 55.9
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 1.9e-25 120.6 298 31.5
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 3.3e-25 119.8 69 78.3
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 4.3e-25 119.4 99 58.6
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 6.2e-24 115.5 251 33.9
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 2.4e-23 113.6 69 68.1
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 2.0e-22 110.5 163 38.0
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 7.9e-19 98.6 95 52.6
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 3.0e-18 96.7 271 29.2
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 3.0e-18 96.7 247 29.1
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 3.0e-18 96.7 271 29.2
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 3.0e-18 96.7 271 29.2
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 3.0e-18 96.7 247 29.1
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.9e-17 94.0 60 66.7
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.5e-17 93.6 67 62.7
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 2.8e-16 90.1 65 60.0
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 2.0e-14 84.0 65 52.3
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 3.4e-14 83.2 73 49.3
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 3.8e-13 79.7 246 28.0
SEGI_12346 Sequoiadendron giganteum HOM05D002950 ORTHO05D010092 5.0e-13 79.3 245 26.1
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 8.4e-13 78.6 53 52.8
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 8.4e-13 78.6 53 52.8
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 1.1e-12 78.2 50 56.0
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 1.4e-12 77.8 273 28.2
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 1.9e-12 77.4 74 41.9
ATR0796G185 Amborella trichopoda HOM05D002950 ORTHO05D009601 3.2e-12 76.6 255 26.7
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 3.2e-12 76.6 260 26.5
CAN.G756.8 Capsicum annuum HOM05D002950 ORTHO05D009601 5.5e-12 75.9 253 28.9
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 7.1e-12 75.5 45 57.8
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 7.1e-12 75.5 71 46.5
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 1.6e-11 74.3 229 27.5
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 3.5e-11 73.2 74 41.9
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla HOM05D002950 ORTHO05D009601 3.5e-11 73.2 251 28.7
Solyc01g088500.3 Solanum lycopersicum HOM05D002950 ORTHO05D009601 3.5e-11 73.2 250 28.0
Sopen01g035360 Solanum pennellii HOM05D002950 ORTHO05D009601 3.5e-11 73.2 250 28.0
Lsat_1_v5_gn_1_40601 Lactuca sativa HOM05D002950 ORTHO05D009601 4.6e-11 72.8 234 28.2
Psat0ss1196g0560 Pisum sativum HOM05D002950 ORTHO05D009601 7.9e-11 72.0 277 25.3
Peaxi162Scf00175g00117 Petunia axillaris HOM05D003287 ORTHO05D003688 1.0e-10 71.6 248 25.8
DCAR_023384 Daucus carota HOM05D002950 ORTHO05D009601 1.3e-10 71.2 243 26.7
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 1.3e-10 71.2 227 28.2
TPR.G12622 Trifolium pratense HOM05D002950 ORTHO05D009601 1.3e-10 71.2 287 27.5
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 1.8e-10 70.9 227 27.3
HanXRQChr11g0350781 Helianthus annuus HOM05D002950 ORTHO05D009601 1.8e-10 70.9 208 27.9
CSS0023681 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 2.3e-10 70.5 253 26.5
FAN12G3100 Fragaria x ananassa HOM05D003287 ORTHO05D003688 2.3e-10 70.5 244 28.7
FAN22G0408 Fragaria x ananassa HOM05D003287 ORTHO05D003688 3.0e-10 70.1 244 28.7
Atru.chr11.1634 Acer truncatum HOM05D003287 ORTHO05D003688 3.9e-10 69.7 247 27.1
FvH4_4g30030 Fragaria vesca HOM05D003287 ORTHO05D003688 3.9e-10 69.7 244 28.3
Ciclev10033305m.g Citrus clementina HOM05D005706 ORTHO05D007474 5.1e-10 69.3 224 26.3
TAR264G0005 Trochodendron aralioides HOM05D003287 ORTHO05D003688 6.7e-10 68.9 232 29.3
Medtr4g123700 Medicago truncatula HOM05D002950 ORTHO05D009601 1.5e-09 67.8 249 26.5
Manes.01G027500 Manihot esculenta HOM05D003287 ORTHO05D003688 2.5e-09 67.0 222 26.6
Sabra10G0120400 Salix brachista HOM05D003287 ORTHO05D003688 5.7e-09 65.9 246 26.4
Solyc05g006700.4 Solanum lycopersicum HOM05D003287 ORTHO05D003688 7.4e-09 65.5 234 26.9
Cc03_g00300 Coffea canephora HOM05D002950 ORTHO05D009601 9.7e-09 65.1 272 26.5
Dinv16734 Davidia involucrata HOM05D003287 ORTHO05D003688 9.7e-09 65.1 248 25.8
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 9.7e-09 65.1 229 27.5
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 1.6e-08 64.3 53 49.1
Potri.010G158500 Populus trichocarpa HOM05D003287 ORTHO05D003688 2.2e-08 63.9 199 26.1
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 2.8e-08 63.5 237 26.6
Sopen05g002650 Solanum pennellii HOM05D003287 ORTHO05D003688 2.8e-08 63.5 234 26.1
Thecc.02G330400 Theobroma cacao HOM05D003287 ORTHO05D003688 2.8e-08 63.5 228 26.8
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 3.7e-08 63.2 234 26.1
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 3.7e-08 63.2 236 25.8
COL.COLO4_27884 Corchorus olitorius HOM05D003287 ORTHO05D003688 4.8e-08 62.8 201 29.4
RcHm_v2.0_Chr4g0438321 Rosa chinensis HOM05D003287 ORTHO05D003688 4.8e-08 62.8 249 26.1
Glyma.01G039900 Glycine max HOM05D003287 ORTHO05D003688 6.3e-08 62.4 242 25.6
Rhsim09G0127300 Rhododendron simsii HOM05D003287 ORTHO05D003688 6.3e-08 62.4 199 28.6
GSVIVG01012219001 Vitis vinifera HOM05D005706 ORTHO05D007474 6.3e-08 62.4 254 24.8
Glyma.02G024900 Glycine max HOM05D003287 ORTHO05D003688 8.2e-08 62.0 234 26.5
Atru.chr11.1884 Acer truncatum HOM05D003287 ORTHO05D003688 1.1e-07 61.6 256 24.6
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 1.1e-07 61.6 37 56.8
Potri.008G095900 Populus trichocarpa HOM05D003287 ORTHO05D003688 1.1e-07 61.6 245 24.5
Prupe.1G286900 Prunus persica HOM05D003287 ORTHO05D003688 1.1e-07 61.6 226 26.5
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.4e-07 61.2 237 26.2
MD13G1062800 Malus domestica HOM05D003287 ORTHO05D003688 1.4e-07 61.2 225 26.7
Sabra08G0072300 Salix brachista HOM05D003287 ORTHO05D003688 1.4e-07 61.2 242 24.4
MD16G1081500 Malus domestica HOM05D003287 ORTHO05D003688 2.4e-07 60.5 246 26.4
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 2.4e-07 60.5 233 25.3
vmacro10425 Vaccinium macrocarpon HOM05D003287 ORTHO05D003688 3.1e-07 60.1 254 26.0
Nitab4.5_0002594g0060 Nicotiana tabacum HOM05D003287 ORTHO05D003688 4.1e-07 59.7 192 28.1
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 5.3e-07 59.3 238 23.5
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 5.3e-07 59.3 234 26.1
QL12p030788 Quercus lobata HOM05D003287 ORTHO05D003688 6.9e-07 58.9 248 25.4
CiPaw.05G125300 Carya illinoinensis HOM05D005706 ORTHO05D007474 9.0e-07 58.5 253 26.1
Haze_11909 Corylus avellana HOM05D003287 ORTHO05D003688 9.0e-07 58.5 255 25.5
MD13G1082400 Malus domestica HOM05D003287 ORTHO05D003688 1.5e-06 57.8 252 27.0
Lsat_1_v5_gn_3_53820 Lactuca sativa HOM05D000677 ORTHO05D000727 2.0e-06 57.4 251 26.3
DCAR_023802 Daucus carota HOM05D000619 ORTHO05D008420 4.5e-06 56.2 259 23.9
Medtr4g105550 Medicago truncatula HOM05D007075 ORTHO05D009063 4.5e-06 56.2 261 23.0


User provided reference genes

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