Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 9.2e-271 936.4 512 100.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.5e-159 567.0 495 68.5
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.7e-139 500.4 488 66.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 4.6e-137 492.3 503 58.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.6e-134 483.8 516 57.9
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 4.5e-132 475.7 482 56.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.9e-128 462.6 489 56.2
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.3e-127 459.5 431 61.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 2.8e-126 456.4 426 60.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.8e-126 456.4 487 55.4
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.1e-125 454.5 503 57.5
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 5.3e-125 452.2 527 52.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 9.0e-125 451.4 507 53.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.8e-123 446.0 471 56.7
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.4e-122 444.1 501 55.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.1e-122 441.8 503 57.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.1e-122 441.8 505 55.2
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.2e-121 441.0 508 55.1
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.2e-121 441.0 482 53.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-121 441.0 509 52.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.8e-120 437.2 480 51.9
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-120 436.8 518 54.2
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.9e-120 436.0 519 55.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 6.7e-120 435.3 478 59.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.1e-119 434.5 491 53.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.3e-119 433.0 433 58.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.4e-119 431.8 514 54.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.3e-118 431.0 502 52.2
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.1e-118 430.3 497 55.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.2e-118 428.7 519 53.8
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 8.1e-118 428.3 490 55.1
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.4e-117 426.8 491 55.2
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.4e-117 426.8 502 53.4
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 4.0e-117 426.0 503 51.9
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.3e-115 421.0 533 52.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.8e-115 419.5 509 50.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 9.3e-114 414.8 522 54.4
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.2e-113 414.5 504 50.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.8e-112 410.6 520 54.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.3e-112 410.2 496 57.7
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.1e-111 407.9 495 51.5
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 3.3e-111 406.4 493 49.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.6e-110 404.1 354 60.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.7e-110 402.9 445 55.3
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 4.8e-110 402.5 502 52.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.1e-109 401.4 482 49.4
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.4e-109 401.0 470 51.9
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-108 397.9 524 52.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.5e-108 397.5 501 53.1
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.5e-108 397.5 528 52.5
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.0e-108 397.1 500 48.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 3.4e-108 396.4 527 52.4
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.0e-107 394.8 477 52.2
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.3e-107 394.4 463 51.8
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.7e-107 394.0 501 47.1
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-106 391.3 538 52.8
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.9e-106 390.6 496 48.2
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 4.2e-106 389.4 453 53.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.6e-105 387.5 475 48.2
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.7e-105 386.7 503 47.3
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.9e-105 385.2 497 47.5
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.3e-104 383.6 501 47.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.3e-104 383.6 455 55.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 9.7e-103 378.3 503 46.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.3e-102 377.9 504 47.4
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 8.2e-102 375.2 337 60.2
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.4e-101 373.6 323 63.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.6e-100 370.2 484 55.0
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.9e-99 366.7 483 46.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.8e-99 366.3 312 63.1
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.2e-98 362.8 482 45.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.2e-98 362.8 482 49.4
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.5e-98 362.5 332 58.7
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 7.2e-98 362.1 501 49.7
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.6e-97 359.4 339 59.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.0e-96 356.7 475 46.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 3.3e-95 353.2 488 47.1
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 4.8e-94 349.4 479 51.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-93 347.4 433 49.4
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.4e-93 347.1 517 46.8
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.2e-92 344.7 443 48.1
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.5e-92 344.4 392 52.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.6e-92 343.6 425 48.5
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.0e-91 341.7 494 46.2
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-91 341.3 486 43.4
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.2e-91 340.5 477 46.8
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 6.5e-91 339.0 433 49.4
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.4e-90 337.8 487 47.4
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.4e-90 337.8 428 48.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.7e-89 333.6 504 43.5
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 3.6e-89 333.2 496 46.6
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.9e-88 329.7 513 43.5
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.9e-88 329.7 355 51.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.2e-88 329.3 351 55.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.5e-87 327.8 507 41.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.0e-87 327.4 470 44.9
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 9.7e-87 325.1 357 50.1
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.8e-86 323.6 433 49.0
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 6.3e-86 322.4 470 43.8
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 7.0e-85 318.9 477 44.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 7.0e-85 318.9 477 44.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 7.0e-85 318.9 477 44.9
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.2e-84 318.2 421 47.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-83 314.7 453 45.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-83 314.7 453 45.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.3e-83 314.7 453 45.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.2e-83 313.9 305 55.1
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 6.5e-83 312.4 492 45.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 8.5e-83 312.0 477 43.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.5e-82 311.2 417 46.3
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-82 311.2 354 50.0
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 9.4e-82 308.5 427 45.4
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-81 306.6 316 50.6
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-81 306.2 477 43.4
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 4.0e-80 303.1 336 52.4
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 6.7e-80 302.4 447 44.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.5e-79 301.2 434 43.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.6e-79 300.4 486 41.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.6e-79 300.4 486 41.6
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.3e-78 298.1 340 50.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 3.7e-78 296.6 467 42.4
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 8.2e-78 295.4 339 47.8
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.8e-77 294.3 362 47.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.4e-77 293.9 404 43.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.5e-76 290.0 315 51.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.5e-76 289.7 328 52.4
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.9e-76 289.3 338 47.9
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 5.9e-76 289.3 324 50.9
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.5e-75 285.8 333 52.0
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.5e-74 282.7 485 39.6
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.1e-73 280.8 346 48.0
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.8e-69 267.7 239 62.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.1e-69 266.5 293 53.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.2e-66 256.9 269 53.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.0e-64 250.0 267 52.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.5e-63 245.7 315 47.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.7e-55 219.5 382 38.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.7e-54 218.0 394 36.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.4e-53 213.0 459 34.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.4e-53 213.0 459 34.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 6.8e-48 196.1 465 32.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.3e-43 181.8 169 61.5
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.7e-41 173.3 182 53.8
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.1e-40 172.2 181 53.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.9e-38 164.1 419 31.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.4e-37 159.8 310 35.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-36 158.7 451 28.4
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.6e-35 152.9 372 30.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.5e-34 151.0 230 38.3
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.5e-34 151.0 297 36.4
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 8.1e-33 146.0 305 33.1
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.5e-31 141.7 350 32.3
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.8e-31 139.8 123 56.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.8e-30 137.1 387 29.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.6e-25 120.6 214 36.4
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.4e-24 118.6 489 23.9
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-18 99.0 156 40.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.6e-17 94.0 83 53.0
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 4.8e-17 93.6 147 43.5
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 9.9e-15 85.9 104 47.1
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-11 74.3 55 67.3
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.6e-09 68.6 55 58.2


User provided reference genes

Program Settings