Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 0.0e+00 1095.9 576 100.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.9e-286 987.6 574 89.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.7e-277 957.2 571 84.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.7e-273 945.7 570 84.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.9e-273 944.9 568 83.8
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.8e-273 944.5 568 84.5
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.4e-272 939.9 583 83.5
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.6e-271 939.1 580 83.8
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.1e-271 938.7 571 83.5
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.1e-271 938.7 538 87.5
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.1e-271 938.7 570 84.0
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.0e-270 936.4 569 83.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.0e-270 936.4 570 83.3
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.3e-270 935.3 534 87.8
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.0e-270 934.9 575 85.6
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.1e-270 934.1 542 86.5
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 6.7e-270 933.7 560 84.8
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 6.7e-270 933.7 575 84.7
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.1e-269 932.9 526 88.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.3e-269 931.4 538 87.9
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.3e-269 931.4 543 87.5
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 7.4e-269 930.2 539 86.8
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.7e-269 929.9 563 83.8
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.7e-268 929.1 563 83.7
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.8e-268 928.3 575 82.8
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.8e-268 928.3 570 82.6
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.8e-267 925.6 540 86.5
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.4e-267 925.2 525 88.8
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 4.1e-267 924.5 538 85.7
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.3e-267 924.1 563 83.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 9.1e-267 923.3 576 81.1
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.5e-266 921.0 532 87.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 4.5e-266 921.0 525 88.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 5.9e-266 920.6 533 86.7
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 7.7e-266 920.2 541 86.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 5.0e-265 917.5 575 81.0
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 6.5e-265 917.1 580 80.9
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.1e-264 916.4 540 86.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 3.2e-264 914.8 540 84.6
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 4.2e-264 914.4 538 86.6
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.2e-264 913.7 541 85.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.6e-263 911.4 540 85.9
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.0e-263 910.2 540 85.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.0e-262 909.8 554 83.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.8e-262 909.1 569 81.9
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.3e-262 908.7 569 81.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 2.3e-262 908.7 520 87.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.9e-262 907.9 522 86.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 5.2e-262 907.5 539 85.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.7e-262 907.1 568 81.3
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.5e-261 906.0 576 80.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 3.3e-261 904.8 536 85.1
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 5.7e-261 904.0 521 86.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 5.7e-261 904.0 598 79.6
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 7.4e-261 903.7 528 85.6
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-260 902.9 569 80.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 3.7e-260 901.4 522 87.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 4.8e-260 901.0 540 83.5
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 4.8e-260 901.0 520 87.9
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.4e-259 899.4 524 85.5
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.4e-259 899.4 524 85.5
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.4e-259 899.4 524 85.5
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-259 899.0 524 85.3
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.8e-259 899.0 524 85.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 5.3e-259 897.5 521 85.4
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.0e-259 897.1 522 85.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.2e-258 896.3 543 83.2
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.0e-258 895.6 522 85.2
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.0e-258 895.6 583 79.1
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.6e-258 895.2 537 84.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.5e-258 894.8 520 86.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.5e-258 894.4 544 82.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.9e-258 894.0 543 83.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 7.7e-258 893.6 519 87.1
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-257 891.3 522 85.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.8e-257 891.3 522 84.7
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.8e-257 891.3 539 83.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 8.5e-257 890.2 522 85.2
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.5e-256 888.6 522 85.2
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.2e-256 887.9 526 84.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.7e-255 885.2 526 84.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-255 885.2 553 81.6
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-254 882.9 553 81.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 9.7e-253 876.7 566 79.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.7e-253 876.7 524 84.5
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.7e-252 875.9 535 82.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-252 875.9 537 81.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.2e-252 875.5 536 83.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.7e-252 874.8 534 81.8
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 8.2e-252 873.6 555 79.6
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.0e-249 864.4 524 82.1
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 8.5e-249 863.6 537 80.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.2e-248 861.3 540 82.2
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 8.0e-247 857.1 538 79.6
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.3e-246 855.5 528 81.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 4.8e-244 847.8 494 84.6
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 7.7e-242 840.5 535 80.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.0e-241 840.1 539 80.3
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 8.6e-241 837.0 473 88.6
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.5e-240 836.3 491 86.4
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.6e-239 831.6 532 79.1
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 6.3e-236 820.8 477 86.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.1e-231 805.8 575 75.0
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.8e-229 797.7 467 87.4
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.4e-227 792.3 496 80.8
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 3.2e-227 792.0 544 72.8
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.4e-222 776.5 501 76.0
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.1e-219 766.9 498 75.3
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.1e-216 756.9 498 74.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.2e-214 748.0 543 73.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.4e-213 745.0 419 86.6
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.7e-210 735.7 417 86.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.8e-207 725.7 405 89.9
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.0e-205 719.5 540 71.5
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.9e-204 714.9 579 68.2
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.3e-201 706.8 495 70.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.4e-195 686.8 544 67.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.0e-193 679.1 498 67.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 8.1e-191 671.0 460 72.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 5.8e-189 664.8 539 68.8
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 7.4e-184 647.9 523 64.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.1e-182 642.5 511 61.3
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 7.1e-171 604.7 318 93.1
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.9e-169 599.0 534 62.7
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.1e-166 590.9 509 63.1
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.2e-163 578.9 523 59.7
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.9e-161 572.4 346 85.0
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.4e-158 563.9 411 67.2
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.4e-158 563.1 499 61.1
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.3e-158 562.0 499 60.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-157 559.7 488 60.9
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 4.7e-138 495.7 331 73.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-133 480.7 496 54.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.5e-123 445.7 500 47.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.6e-122 444.1 611 48.4
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 5.8e-104 382.5 547 40.2
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-98 364.8 431 50.3
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.3e-91 340.1 346 56.4
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.6e-88 330.5 439 40.8
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.5e-72 278.1 167 85.6
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.3e-71 275.0 177 75.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.7e-71 274.6 534 38.4
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-62 243.8 303 47.9
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.5e-56 223.4 413 39.2
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.7e-52 209.1 478 34.7
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.3e-47 195.3 138 72.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.2e-46 189.5 105 87.6
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-41 174.9 118 80.5
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.4e-40 170.6 106 84.0
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.3e-35 154.1 116 68.1
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 4.5e-32 143.7 80 86.2
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.5e-32 143.7 97 82.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 5.2e-28 130.2 77 87.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 5.0e-23 113.6 65 89.2
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 6.8e-20 103.2 71 76.1
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 8.8e-20 102.8 76 67.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-17 95.9 73 57.5
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-16 91.3 54 85.2
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 7.7e-16 89.7 69 72.5
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.7e-16 89.7 50 86.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.4e-12 79.0 53 73.6
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-11 75.9 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.5e-11 75.5 98 48.0
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.4e-11 74.3 43 81.4
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.0e-09 66.6 52 63.5
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.2e-08 65.9 143 39.9
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 5.9e-08 63.5 52 59.6
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-07 62.4 57 54.4
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 7.3e-06 56.6 44 56.8


User provided reference genes

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