Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 5.7e-83 310.8 153 100.0
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.2e-40 170.2 162 64.2
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.2e-40 170.2 162 64.2
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.2e-40 170.2 162 64.2
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.4e-33 146.7 180 48.9
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.8e-33 146.4 169 55.6
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 4.6e-32 141.7 154 56.5
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 2.3e-31 139.4 155 54.8
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 3.9e-31 138.7 169 52.7
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 2.5e-30 136.0 162 50.6
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.6e-29 133.3 170 48.8
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.0e-27 126.3 150 52.0
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 2.2e-26 122.9 173 51.4
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 2.2e-26 122.9 166 48.2
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 4.9e-26 121.7 159 51.6
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 8.3e-26 120.9 171 44.4
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.9e-25 119.8 165 48.5
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 2.4e-25 119.4 168 47.6
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 7.0e-25 117.9 174 44.3
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 9.2e-25 117.5 162 46.9
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.9e-22 109.8 180 41.7
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 5.6e-22 108.2 169 46.2
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 5.6e-22 108.2 169 40.2
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 7.3e-22 107.8 139 52.5
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 2.8e-21 105.9 183 41.0
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 3.6e-21 105.5 148 50.0
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 6.2e-21 104.8 165 44.8
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 3.1e-20 102.4 177 36.7
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 3.1e-20 102.4 170 41.2
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 5.2e-20 101.7 164 43.9
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 8.9e-20 100.9 150 41.3
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 8.9e-20 100.9 166 41.6
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.2e-19 100.5 164 43.3
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.2e-19 100.5 159 44.0
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.2e-19 100.5 164 40.9
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 1.5e-19 100.1 144 45.1
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 3.4e-19 99.0 155 45.2
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 4.4e-19 98.6 169 43.8
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 7.5e-19 97.8 171 45.6
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 9.8e-19 97.4 170 42.9
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 4.9e-18 95.1 181 38.1
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 6.4e-18 94.7 149 42.3
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 8.3e-18 94.4 181 37.6
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.1e-17 94.0 148 37.8
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 1.9e-17 93.2 140 44.3
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 1.9e-17 93.2 155 43.2
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.4e-17 92.8 167 43.7
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.2e-17 92.4 157 42.7
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 4.6e-16 88.6 134 41.8
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.8e-16 87.8 157 41.4
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.8e-16 87.8 169 36.1
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 7.8e-16 87.8 169 36.1
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.1e-14 84.0 165 40.0
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 4.3e-14 82.0 185 34.1
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 9.5e-14 80.9 149 39.6
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.8e-13 79.3 82 51.2
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 2.8e-13 79.3 137 40.9
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 3.6e-13 79.0 173 36.4
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 6.2e-13 78.2 97 46.4
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 1.4e-12 77.0 134 40.3
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.4e-12 77.0 71 53.5
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.4e-12 77.0 146 37.7
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.1e-12 75.9 159 39.0
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 3.1e-12 75.9 164 39.0
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.0e-12 75.5 97 45.4
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 8.9e-12 74.3 185 35.1
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 1.5e-11 73.6 159 31.4
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 2.0e-11 73.2 110 43.6
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.4e-11 72.4 159 39.0
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 7.6e-11 71.2 79 53.2
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 1.3e-10 70.5 73 50.7
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 1.7e-10 70.1 139 38.1
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.9e-10 69.3 83 45.8
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.8e-10 68.9 95 42.1
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.8e-10 68.9 107 44.9
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.8e-10 68.9 107 43.9
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 3.8e-10 68.9 74 45.9
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 3.8e-10 68.9 89 42.7
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 3.8e-10 68.9 105 45.7
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 4.9e-10 68.6 76 53.9
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 4.9e-10 68.6 107 44.9
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 4.9e-10 68.6 78 50.0
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 4.9e-10 68.6 92 41.3
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 6.4e-10 68.2 155 36.1
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 6.4e-10 68.2 132 34.8
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 8.4e-10 67.8 130 36.9
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 1.4e-09 67.0 81 44.4
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 1.4e-09 67.0 79 50.6
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 1.9e-09 66.6 128 42.2
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 2.4e-09 66.2 167 35.3
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 2.4e-09 66.2 116 41.4
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 2.4e-09 66.2 71 53.5
Rhsim01G0227100 Rhododendron simsii HOM05D005967 ORTHO05D005174 3.2e-09 65.9 118 39.8
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 4.1e-09 65.5 128 35.2
Psat0s8791g0040 Pisum sativum HOM05D005967 ORTHO05D005174 5.4e-09 65.1 110 37.3
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 7.1e-09 64.7 62 54.8
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 7.1e-09 64.7 95 47.4
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 7.1e-09 64.7 89 44.9
BcaC01g04994 Brassica carinata HOM05D010012 ORTHO05D012171 1.2e-08 63.9 148 34.5
C03p31310 Brassica napus HOM05D010012 ORTHO05D012171 1.2e-08 63.9 148 34.5
BolC3t15480H Brassica oleracea HOM05D010012 ORTHO05D012171 1.2e-08 63.9 148 34.5
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 1.2e-08 63.9 60 48.3
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 1.6e-08 63.5 109 37.6
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 1.6e-08 63.5 168 30.4
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 2.1e-08 63.2 140 35.7
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 2.1e-08 63.2 89 47.2
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 3.5e-08 62.4 64 50.0
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.6e-08 62.0 172 30.8
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 4.6e-08 62.0 173 30.6
MELO3C003127.2 Cucumis melo HOM05D023073 ORTHO05D005174 6.0e-08 61.6 81 44.4
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 6.0e-08 61.6 157 38.9
BcaB06g28260 Brassica carinata HOM05D010012 ORTHO05D012171 7.8e-08 61.2 150 34.0
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 7.8e-08 61.2 147 30.6
SGA_v2.0_scaffold126G33790 Striga asiatica HOM05D005967 ORTHO05D005174 7.8e-08 61.2 80 42.5
TAR688G0002 Trochodendron aralioides HOM05D000645 ORTHO05D005174 1.0e-07 60.8 143 40.6
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 1.3e-07 60.5 120 39.2
A03p26230 Brassica napus HOM05D010012 ORTHO05D012171 1.7e-07 60.1 148 33.1
BraA03t11837Z Brassica rapa HOM05D010012 ORTHO05D012171 1.7e-07 60.1 148 33.1
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.7e-07 60.1 126 34.1
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.7e-07 60.1 71 45.1
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.7e-07 60.1 128 39.8
Psat7g217000 Pisum sativum HOM05D005967 ORTHO05D005174 2.3e-07 59.7 106 36.8
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 3.9e-07 58.9 78 44.9
MSTRG.19086 Avicennia marina HOM05D005967 ORTHO05D005174 3.9e-07 58.9 119 38.7
Sp4g11680 Schrenkiella parvula HOM05D010012 ORTHO05D012171 3.9e-07 58.9 141 33.3
A04p21920 Brassica napus HOM05D010012 ORTHO05D012171 5.1e-07 58.5 148 34.5
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 5.1e-07 58.5 104 42.3
RcHm_v2.0_Chr3g0466771 Rosa chinensis HOM05D018126 ORTHO05D020711 5.1e-07 58.5 73 50.7
CAN.G530.10 Capsicum annuum HOM05D016316 ORTHO05D018871 6.6e-07 58.2 95 35.8
FAN02G3432 Fragaria x ananassa HOM05D018126 ORTHO05D020711 6.6e-07 58.2 74 50.0
FAN09G2724 Fragaria x ananassa HOM05D018126 ORTHO05D020711 6.6e-07 58.2 74 50.0
Carub.0004s0986 Capsella rubella HOM05D010012 ORTHO05D012171 8.6e-07 57.8 162 34.6
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 1.1e-06 57.4 95 43.2
CARHR122020 Cardamine hirsuta HOM05D010012 ORTHO05D012171 1.1e-06 57.4 161 30.4
AL4G23400 Arabidopsis lyrata HOM05D010012 ORTHO05D012171 1.5e-06 57.0 158 29.1
CsaV3_4G024960 Cucumis sativus L. HOM05D023073 ORTHO05D005174 1.5e-06 57.0 90 41.1
ATR0559G028 Amborella trichopoda HOM05D005967 ORTHO05D005174 1.9e-06 56.6 143 30.8
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 1.9e-06 56.6 77 45.5
Medtr4g021870 Medicago truncatula HOM05D005967 ORTHO05D005174 2.5e-06 56.2 52 51.9
Medtr4g063885 Medicago truncatula HOM05D005967 ORTHO05D005174 2.5e-06 56.2 103 38.8
BcaB01g03127 Brassica carinata HOM05D010012 ORTHO05D012171 3.3e-06 55.8 90 41.1
CAN.G530.11 Capsicum annuum HOM05D016316 ORTHO05D018871 3.3e-06 55.8 119 36.1
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 3.3e-06 55.8 42 64.3
BcaB02g10207 Brassica carinata HOM05D010012 ORTHO05D012171 4.3e-06 55.5 123 35.8
A07p19320 Brassica napus HOM05D010012 ORTHO05D012171 4.3e-06 55.5 136 30.1
BraA07t29637Z Brassica rapa HOM05D010012 ORTHO05D012171 4.3e-06 55.5 136 30.1
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 4.3e-06 55.5 62 54.8
BcaC02g11018 Brassica carinata HOM05D010012 ORTHO05D012171 5.6e-06 55.1 79 40.5
C04p22150 Brassica napus HOM05D010012 ORTHO05D012171 5.6e-06 55.1 79 40.5
BolC4t23735H Brassica oleracea HOM05D010012 ORTHO05D012171 5.6e-06 55.1 79 40.5
Lsat_1_v5_gn_9_23241 Lactuca sativa HOM05D030279 ORTHO05D029282 5.6e-06 55.1 136 33.1
FAN05G2792 Fragaria x ananassa HOM05D018126 ORTHO05D020711 7.3e-06 54.7 74 48.6
FAN09G0198 Fragaria x ananassa HOM05D018126 ORTHO05D020711 7.3e-06 54.7 74 48.6
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 7.3e-06 54.7 131 36.6


User provided reference genes

Program Settings