Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.5e-211 739.2 364 100.0
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 3.7e-181 638.3 366 86.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.8e-144 515.8 366 71.6
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.8e-144 515.8 366 71.6
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.7e-136 488.4 366 69.1
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.5e-129 466.8 380 65.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 3.6e-128 462.2 382 65.2
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.4e-126 455.7 365 65.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.9e-124 449.9 336 70.2
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.1e-124 448.7 361 64.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.2e-123 447.2 366 63.1
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.5e-123 445.7 361 64.5
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.8e-123 444.5 369 64.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.1e-122 441.8 367 63.5
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.1e-122 441.8 367 63.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.9e-121 439.9 366 62.3
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.2e-120 437.2 366 61.2
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.4e-119 433.0 369 62.1
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.1e-119 432.6 363 61.4
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.5e-118 430.3 358 61.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.4e-117 424.5 367 61.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-115 420.2 363 60.9
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.7e-115 419.5 368 60.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.0e-114 417.5 367 62.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.7e-114 416.8 358 62.3
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.3e-114 416.4 369 60.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.3e-114 416.4 358 60.3
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.0e-114 416.0 368 59.8
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.9e-114 415.6 361 61.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.1e-113 414.1 369 60.2
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.9e-113 413.3 365 61.4
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.3e-113 412.5 367 59.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 9.6e-113 411.0 369 59.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.1e-112 409.8 377 57.3
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 3.6e-112 409.1 362 59.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.1e-111 407.5 367 60.2
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 4.0e-111 405.6 363 59.0
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.0e-111 405.6 371 59.3
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.6e-110 402.9 367 59.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 3.4e-110 402.5 368 61.4
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 3.4e-110 402.5 382 58.1
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 4.4e-110 402.1 364 58.5
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 9.9e-110 401.0 366 56.0
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 9.9e-110 401.0 377 58.1
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 9.9e-110 401.0 377 58.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-109 400.6 363 59.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.7e-109 400.2 370 59.2
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.2e-109 399.8 371 59.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.2e-108 395.6 368 56.2
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 9.3e-108 394.4 368 56.2
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 9.3e-108 394.4 370 58.9
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.1e-107 393.3 365 58.9
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.1e-107 393.3 365 57.5
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.5e-107 392.5 358 57.8
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.0e-107 391.7 377 56.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.0e-107 391.7 365 58.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.7e-106 390.2 361 57.9
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.1e-106 388.7 392 53.1
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 6.6e-106 388.3 370 57.8
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.6e-106 388.3 369 56.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.9e-105 386.7 392 52.8
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-104 384.0 395 52.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.6e-104 383.6 375 54.9
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.1e-104 383.3 361 60.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 4.8e-104 382.1 367 55.3
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.8e-104 382.1 356 57.3
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.8e-104 382.1 274 67.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.1e-103 380.9 369 56.9
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.0e-102 376.7 370 55.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.5e-102 375.6 372 54.0
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.8e-102 375.2 367 55.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 3.8e-101 372.5 283 65.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 8.4e-101 371.3 373 55.8
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-100 370.9 369 54.7
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.9e-100 370.2 377 54.9
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 3.2e-100 369.4 356 55.6
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.2e-99 367.5 362 55.2
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 2.7e-99 366.3 370 54.6
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.5e-99 365.9 367 56.1
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.3e-98 364.0 300 61.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.8e-98 363.6 360 55.0
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.9e-98 362.5 363 55.6
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.9e-98 362.5 357 55.2
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-97 360.5 358 53.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 9.0e-95 351.3 316 57.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.6e-94 349.7 273 62.3
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.6e-94 349.7 304 60.5
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 5.8e-94 348.6 366 54.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.8e-94 348.6 362 53.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.9e-93 345.5 362 51.4
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.9e-93 345.5 361 52.4
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.1e-92 344.4 366 54.6
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-92 344.0 317 60.6
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.4e-92 344.0 358 51.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.6e-91 340.5 361 52.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.1e-91 340.1 409 49.6
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.6e-91 339.0 327 56.6
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 4.6e-91 339.0 361 52.9
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.9e-91 338.2 362 52.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.0e-90 337.8 358 53.6
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 3.9e-90 335.9 358 53.1
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.9e-90 335.9 358 53.1
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.9e-89 333.6 278 59.0
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.5e-89 333.2 370 51.9
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.3e-88 330.9 358 51.1
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.1e-88 330.1 373 50.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 8.2e-88 328.2 357 49.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.0e-87 325.9 361 51.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-86 322.8 362 50.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.5e-86 322.4 355 51.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.6e-86 321.6 365 51.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.3e-85 320.9 363 50.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.2e-85 320.1 357 49.0
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.8e-85 319.3 357 50.7
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 4.9e-85 318.9 364 50.5
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 8.4e-85 318.2 362 51.1
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.9e-84 317.0 357 50.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.2e-84 316.2 357 50.1
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 7.1e-84 315.1 361 50.4
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 9.3e-84 314.7 364 50.0
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.2e-83 314.3 358 49.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.1e-83 313.5 361 51.2
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 3.5e-83 312.8 370 50.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 7.9e-83 311.6 263 60.1
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.8e-82 310.5 361 50.7
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.8e-82 310.5 329 52.0
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.2e-80 303.5 286 54.9
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 8.2e-80 301.6 264 58.3
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 4.1e-79 299.3 359 49.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.5e-78 297.4 297 53.9
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.5e-77 292.0 317 49.5
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.2e-76 289.3 235 60.0
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-74 283.9 319 51.4
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.3e-74 283.5 319 50.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-73 281.2 319 49.5
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.5e-73 280.8 334 47.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.5e-73 280.8 334 47.6
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 9.7e-73 278.1 334 47.3
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 6.3e-72 275.4 382 43.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.5e-70 270.8 366 46.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-70 270.4 318 48.1
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.3e-64 248.8 246 54.5
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 9.4e-60 235.0 432 35.9
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.8e-58 230.7 349 40.4
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.2e-58 229.2 322 43.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.5e-57 227.6 219 54.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.8e-55 220.7 267 45.7
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.5e-54 216.1 182 63.2
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 9.4e-52 208.4 322 42.2
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 6.1e-51 205.7 219 52.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.0e-50 203.4 321 39.9
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.2e-50 202.6 153 69.3
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-44 184.5 185 50.8
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.4e-42 177.9 204 52.0
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.4e-41 173.3 257 40.5
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.4e-39 167.2 165 53.9
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 1.0e-37 161.8 137 54.0
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.3e-37 161.4 454 27.5
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.9e-34 148.7 161 50.9
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.7e-29 134.4 179 44.7
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.5e-28 131.3 209 38.8
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 2.1e-27 127.5 289 30.4
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 4.9e-24 116.3 124 48.4
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.9e-24 116.3 121 51.2
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 4.1e-23 113.2 81 65.4
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.0e-21 108.6 136 49.3
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-20 104.4 124 49.2
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.8e-18 97.8 289 27.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 8.9e-18 95.5 128 41.4
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 8.9e-18 95.5 154 40.9
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.2e-17 95.1 185 30.8
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.0e-17 94.4 68 60.3
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-17 94.4 86 54.7
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.6e-17 94.0 77 59.7
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.8e-17 92.8 87 51.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 5.8e-17 92.8 110 45.5
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.2e-11 75.1 87 48.3
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.1e-11 74.3 124 37.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 4.7e-11 73.2 57 57.9
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.5e-09 68.2 42 71.4
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 3.4e-09 67.0 41 78.0
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.4e-09 66.6 315 24.4
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 9.9e-09 65.5 43 72.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.9e-08 63.9 52 59.6
Gohir.D03G068466 Gossypium hirsutum HOM05D021254 ORTHO05D036334 6.0e-06 56.2 36 69.4
Gohir.D05G345901 Gossypium hirsutum HOM05D021254 ORTHO05D004299 6.0e-06 56.2 49 57.1
Gorai.003G053800 Gossypium raimondii HOM05D021254 ORTHO05D036334 6.0e-06 56.2 36 69.4


User provided reference genes

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