Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 4.2e-223 777.7 396 100.0
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 2.4e-186 655.6 414 82.6
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.9e-168 595.1 413 76.8
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 5.1e-168 594.7 422 74.6
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 6.6e-168 594.3 413 76.8
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 8.7e-168 594.0 420 74.8
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.3e-167 592.0 423 73.8
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.7e-163 579.7 385 77.1
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 1.6e-161 573.2 382 77.0
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 4.6e-161 571.6 423 70.9
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.3e-160 570.1 380 76.8
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.8e-160 569.7 386 75.1
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.1e-159 567.0 431 70.1
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.1e-159 567.0 386 74.6
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 6.2e-158 561.2 388 74.2
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.1e-157 560.5 381 75.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.0e-157 558.5 410 70.5
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.0e-157 557.4 387 73.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.6e-156 555.8 410 69.0
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.8e-156 554.7 377 75.9
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.3e-155 553.5 388 72.4
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-155 553.5 382 73.8
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.9e-155 552.4 423 68.8
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.8e-155 552.0 410 68.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 4.9e-155 551.6 393 72.5
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 8.4e-155 550.8 416 67.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 7.1e-154 547.7 410 68.0
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 7.1e-154 547.7 388 70.9
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 7.1e-154 547.7 387 71.3
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 9.3e-154 547.4 383 72.1
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 9.3e-154 547.4 380 74.2
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.2e-153 547.0 388 70.6
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.6e-153 546.6 380 74.5
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 2.1e-153 546.2 405 69.9
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 3.5e-153 545.4 414 69.3
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 3.5e-153 545.4 381 72.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.0e-152 543.9 392 69.6
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.3e-152 543.5 381 72.4
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.8e-152 543.1 388 72.2
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.8e-152 543.1 399 73.2
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.3e-152 542.7 376 72.9
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 3.0e-152 542.3 434 65.2
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 8.7e-152 540.8 408 69.4
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.9e-151 539.7 379 72.6
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.9e-151 539.7 417 68.1
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.5e-151 539.3 408 69.6
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 3.3e-151 538.9 443 64.8
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 4.3e-151 538.5 391 70.8
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 5.6e-151 538.1 423 66.2
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.6e-150 536.6 403 68.7
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.8e-150 535.0 394 70.1
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 8.2e-150 534.3 390 71.5
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 4.0e-149 531.9 389 70.2
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 4.0e-149 531.9 409 67.5
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 5.3e-149 531.6 426 66.7
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 6.9e-149 531.2 414 67.6
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.2e-148 530.4 416 65.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 5.8e-148 528.1 377 70.8
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 7.6e-148 527.7 415 67.5
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.1e-146 523.9 432 65.5
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 3.5e-145 518.8 389 69.2
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.7e-144 514.6 381 69.8
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 7.4e-143 511.1 397 66.8
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 3.1e-141 505.8 380 68.9
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 2.6e-140 502.7 377 68.7
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.4e-140 502.3 429 65.5
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.4e-140 502.3 429 65.5
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-139 500.7 360 71.7
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 8.5e-139 497.7 357 72.0
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.4e-138 496.9 378 69.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 3.3e-135 485.7 379 66.2
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 3.7e-134 482.3 382 64.9
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 6.3e-134 481.5 387 64.9
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 8.2e-134 481.1 389 66.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 2.4e-133 479.6 377 64.2
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 5.3e-133 478.4 377 63.7
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 9.1e-133 477.6 374 63.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-132 477.2 377 63.9
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 3.4e-132 475.7 394 62.2
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 7.7e-132 474.6 374 65.5
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.0e-131 474.2 377 63.4
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-131 473.8 385 62.9
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.7e-131 473.4 376 62.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 8.5e-131 471.1 378 61.4
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 7.9e-129 464.5 375 64.5
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 3.0e-128 462.6 341 70.1
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 3.3e-127 459.1 399 60.9
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.7e-126 456.8 404 57.7
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 4.8e-126 455.3 373 60.9
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.5e-124 448.7 350 64.6
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 7.7e-124 448.0 351 66.1
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.7e-123 446.8 373 61.4
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 4.2e-122 442.2 390 61.5
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 6.1e-121 438.3 384 60.2
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 3.7e-118 429.1 337 66.2
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 1.8e-117 426.8 410 56.1
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.9e-115 419.5 303 70.6
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.9e-114 416.8 377 57.3
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.5e-114 415.2 377 57.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.6e-113 413.7 385 56.4
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 8.0e-113 411.4 412 54.9
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 8.0e-113 411.4 374 58.0
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.0e-112 411.0 429 52.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.6e-111 406.4 430 51.6
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-105 386.3 426 52.8
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 6.1e-105 385.2 339 61.1
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.0e-104 384.4 367 54.5
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 4.4e-103 379.0 360 56.4
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.3e-102 377.5 363 54.0
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.1e-101 372.5 324 62.3
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.1e-97 358.6 278 65.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.4e-95 352.4 351 52.1
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 9.8e-95 351.3 340 53.8
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.5e-90 337.4 354 52.8
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 9.5e-90 334.7 264 67.4
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.4e-88 330.9 257 66.9
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.4e-85 318.9 333 53.8
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 5.2e-80 302.4 365 47.4
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.1e-77 294.7 289 58.5
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-70 271.2 195 72.8
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 6.4e-70 268.9 225 62.2
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.3e-67 260.4 228 55.7
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.9e-54 216.9 202 61.9
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.5e-47 194.5 233 50.2
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 2.6e-47 193.7 330 37.6
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.5e-47 193.0 122 76.2
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.2e-46 190.7 205 50.2
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 2.9e-46 190.3 330 38.5
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 3.8e-46 189.9 187 54.5
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 3.8e-46 189.9 157 60.5
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 9.3e-45 185.3 118 75.4
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 2.3e-43 180.6 119 74.8
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 3.9e-43 179.9 116 76.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 6.7e-43 179.1 116 75.9
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 6.9e-40 169.1 111 73.0
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.6e-39 167.2 145 59.3
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 7.6e-39 165.6 105 77.1
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 1.3e-38 164.9 116 70.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.1e-37 161.8 112 70.5
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.2e-37 160.2 193 48.7
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.4e-29 134.8 104 67.3
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 6.1e-28 129.4 91 71.4
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 6.3e-25 119.4 91 67.0
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 3.8e-22 110.2 77 68.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 4.2e-21 106.7 74 68.9
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.1e-20 104.4 118 47.5
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 3.6e-20 103.6 73 65.8
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 3.6e-20 103.6 73 65.8
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.1e-20 102.8 64 81.2
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.8e-19 101.3 91 59.3
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-18 98.6 63 77.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-17 94.7 57 82.5
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 3.7e-17 93.6 73 65.8
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 3.1e-16 90.5 60 70.0
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 6.9e-16 89.4 60 70.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 6.9e-16 89.4 60 70.0
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 6.9e-16 89.4 60 70.0
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 6.9e-16 89.4 60 70.0
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 3.4e-15 87.0 64 68.8
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 4.5e-15 86.7 60 70.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 7.7e-15 85.9 67 64.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 5.0e-14 83.2 58 65.5
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-13 82.0 106 44.3
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.5e-13 80.9 326 22.7
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 7.2e-13 79.3 333 21.9
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 6.1e-12 76.3 56 64.3
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 7.9e-12 75.9 76 52.6
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 3.0e-11 73.9 52 61.5
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.0e-08 62.8 93 40.9
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 1.5e-07 61.6 111 41.4
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 3.5e-07 60.5 58 56.9
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 2.2e-06 57.8 44 56.8
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.8e-06 57.0 181 27.6
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.8e-06 57.0 181 27.6
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 6.5e-06 56.2 42 59.5
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 8.5e-06 55.8 187 28.9
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 8.5e-06 55.8 173 30.6


User provided reference genes

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