Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 7.4e-107 390.6 200 100.0
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 3.8e-79 298.5 207 78.3
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 9.4e-78 293.9 200 78.5
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 1.1e-75 287.0 198 75.3
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 5.7e-75 284.6 205 76.6
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 7.4e-75 284.3 198 75.3
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 9.1e-73 277.3 199 73.9
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.2e-72 276.9 197 74.1
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 1.2e-72 276.9 196 74.5
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 1.0e-71 273.9 199 71.9
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 2.2e-71 272.7 197 72.6
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.2e-71 272.7 200 72.5
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.1e-70 270.4 202 70.3
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 3.2e-70 268.9 196 74.0
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 1.6e-69 266.5 199 72.9
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 7.9e-69 264.2 201 73.1
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.3e-68 262.7 197 67.5
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 2.3e-68 262.7 189 71.4
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 3.9e-68 261.9 195 69.2
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 1.1e-67 260.4 197 71.6
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.1e-67 260.4 201 68.7
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 1.1e-67 260.4 186 74.7
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 1.5e-67 260.0 197 67.0
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 3.3e-67 258.8 186 74.2
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 5.7e-67 258.1 186 74.2
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 2.2e-66 256.1 197 72.1
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 2.2e-66 256.1 197 68.0
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 1.8e-65 253.1 159 81.1
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 2.4e-65 252.7 198 71.2
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 7.0e-65 251.1 201 68.7
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.2e-64 250.4 199 69.8
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 1.6e-64 250.0 196 68.9
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 4.5e-64 248.4 195 69.7
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 7.7e-64 247.7 169 76.3
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 7.7e-64 247.7 194 68.0
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-63 246.9 199 68.8
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.7e-63 246.5 191 71.2
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 2.2e-63 246.1 195 68.7
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 6.5e-63 244.6 194 69.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 1.5e-62 243.4 199 66.8
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 1.9e-62 243.0 157 78.3
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 2.5e-62 242.7 199 66.8
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 3.2e-62 242.3 165 73.9
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 4.2e-62 241.9 181 70.2
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 9.4e-62 240.7 229 57.6
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 2.1e-61 239.6 149 82.6
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 2.7e-61 239.2 189 66.7
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 6.1e-61 238.0 229 57.2
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 6.1e-61 238.0 199 63.3
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 8.0e-61 237.7 145 81.4
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 8.0e-61 237.7 198 69.2
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 1.0e-60 237.3 150 81.3
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 4.0e-60 235.3 216 62.5
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 4.0e-60 235.3 207 61.8
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 6.7e-60 234.6 200 65.0
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 3.3e-59 232.3 187 68.4
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.3e-59 232.3 197 66.0
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 3.3e-59 232.3 159 76.1
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 7.5e-59 231.1 184 71.2
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 1.7e-58 229.9 191 62.8
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.7e-58 229.9 192 64.6
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 2.2e-58 229.6 169 70.4
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 3.7e-58 228.8 180 65.0
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 3.7e-58 228.8 167 71.3
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 4.8e-58 228.4 179 68.2
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 6.3e-58 228.0 196 60.2
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 1.6e-56 223.4 191 64.4
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 2.7e-56 222.6 165 70.3
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 4.5e-56 221.9 201 61.7
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 5.9e-56 221.5 212 58.0
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 5.9e-56 221.5 144 75.7
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 7.7e-56 221.1 199 64.3
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 2.2e-55 219.5 154 75.3
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 3.8e-55 218.8 192 64.1
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 3.8e-55 218.8 198 62.6
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 5.0e-55 218.4 227 55.9
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 8.5e-55 217.6 201 60.7
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 1.5e-54 216.9 154 72.1
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 1.9e-54 216.5 179 65.4
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 3.2e-54 215.7 201 60.2
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 2.1e-53 213.0 198 61.6
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 2.1e-53 213.0 241 54.8
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 4.0e-52 208.8 202 61.9
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 8.8e-52 207.6 148 73.6
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 8.8e-52 207.6 148 73.6
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.7e-50 203.4 134 76.9
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 2.7e-48 196.1 133 69.9
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 4.5e-48 195.3 133 72.2
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.7e-47 193.4 198 59.1
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 8.0e-45 184.5 108 88.9
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 6.8e-44 181.4 105 88.6
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 8.9e-44 181.0 169 61.5
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 3.4e-43 179.1 109 85.3
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 7.5e-43 177.9 122 72.1
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.7e-42 176.8 217 49.3
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 2.8e-42 176.0 158 62.0
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 3.5e-40 169.1 199 51.8
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 2.3e-39 166.4 111 75.7
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 3.8e-39 165.6 97 87.6
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.1e-38 164.1 104 76.9
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 6.1e-37 158.3 182 52.2
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 2.9e-34 149.4 107 70.1
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 1.8e-33 146.7 140 56.4
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 1.1e-30 137.5 126 55.6
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 4.7e-29 132.1 124 56.5
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 6.8e-28 128.3 89 75.3
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 3.4e-27 125.9 71 94.4
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 3.4e-27 125.9 71 94.4
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 2.9e-26 122.9 140 53.6
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.1e-25 120.9 99 66.7
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.5e-24 115.9 77 76.6
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 7.8e-24 114.8 69 81.2
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 6.8e-20 101.7 114 51.8
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 6.0e-16 88.6 109 38.5
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 1.6e-08 63.9 39 76.9
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 1.6e-08 63.9 39 76.9
COL.COLO4_23179 Corchorus olitorius HOM05D006913 ORTHO05D157497 5.6e-06 55.5 63 49.2


User provided reference genes

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