Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1957.6 950 100.0
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1359.7 979 68.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1352.0 976 68.8
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1340.1 996 67.7
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1311.2 985 65.6
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1309.3 973 66.9
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1258.4 980 64.2
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1247.6 991 63.1
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 982 63.1
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1230.7 1034 60.9
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1229.2 955 63.5
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 977 61.9
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1185.2 982 59.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1180.6 988 60.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1177.9 982 61.1
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1167.1 990 59.3
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1154.0 975 59.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1152.1 982 59.6
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1147.1 975 58.4
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1136.7 1024 56.2
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1132.5 1066 55.4
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1132.1 979 58.2
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1126.3 942 60.4
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1124.4 969 58.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1120.9 978 56.6
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1110.1 974 58.6
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1108.2 979 57.2
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1106.3 975 58.8
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1104.0 971 58.7
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1101.7 975 58.5
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1100.1 980 56.7
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1099.0 951 57.9
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1097.0 989 56.7
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1096.6 999 56.1
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1095.5 970 60.4
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1088.2 978 56.2
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1083.9 979 56.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1082.4 977 56.1
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1082.4 978 55.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1080.1 997 55.9
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 1.3e-311 1073.2 967 56.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 1.3e-310 1069.7 993 55.3
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 2.9e-310 1068.5 989 55.9
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 7.8e-308 1060.4 994 55.8
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.1e-306 1056.6 1008 54.8
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 1.3e-305 1053.1 980 55.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 1.3e-305 1053.1 983 54.9
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 6.2e-305 1050.8 960 55.5
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 6.9e-304 1047.3 978 55.0
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 2.6e-303 1045.4 969 55.1
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 6.4e-302 1040.8 978 54.9
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 6.4e-302 1040.8 978 52.9
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 3.0e-299 1031.9 946 53.9
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.5e-298 1029.6 977 53.1
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.9e-298 1029.2 968 55.2
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 9.6e-298 1026.9 947 53.1
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 1.6e-297 1026.2 977 52.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.8e-297 1025.4 945 53.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 8.1e-297 1023.8 979 54.9
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 1.8e-296 1022.7 946 53.7
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 3.1e-296 1021.9 983 54.1
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 4.5e-295 1018.1 984 52.3
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 5.8e-295 1017.7 975 52.2
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 1.1e-293 1013.4 946 53.4
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.1e-293 1013.4 979 54.0
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 3.2e-293 1011.9 950 53.1
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 4.2e-293 1011.5 951 52.6
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 2.7e-292 1008.8 944 53.2
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 1.3e-291 1006.5 944 53.4
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 2.3e-291 1005.7 956 52.2
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 8.7e-291 1003.8 1008 50.8
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 4.3e-290 1001.5 987 53.5
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 2.8e-289 998.8 977 53.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 4.5e-287 991.5 976 52.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 8.4e-286 987.3 973 53.9
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.3e-283 979.9 1047 51.2
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 1.3e-283 979.9 979 52.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.9e-282 976.1 985 52.4
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 9.1e-272 940.6 986 50.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 1.0e-270 937.2 752 60.6
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.5e-263 913.3 636 71.7
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.0e-263 912.9 641 72.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 1.7e-262 909.8 992 49.5
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.8e-259 899.8 751 59.4
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.3e-230 803.9 737 57.8
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 7.3e-229 798.1 986 45.3
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 1.2e-228 797.3 973 45.3
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 4.1e-216 755.7 606 63.4
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.7e-206 723.8 587 62.5
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 2.8e-196 689.9 604 58.8
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 8.7e-190 668.3 594 58.4
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.7e-175 620.2 530 57.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.8e-171 607.4 957 39.0
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.3e-164 584.7 980 37.4
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.1e-163 580.1 442 66.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.3e-161 574.7 1076 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 2.0e-157 560.8 973 36.7
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.4e-154 550.1 972 37.9
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.5e-144 516.2 682 41.9
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.3e-140 502.7 598 49.2
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.0e-121 442.2 442 52.7
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.4e-110 405.2 883 32.7
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.7e-106 391.0 368 53.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 4.6e-106 390.2 317 65.0
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-102 376.7 360 54.4
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 4.4e-85 320.5 382 46.6
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.0e-81 309.3 335 50.7
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.4e-75 287.0 408 40.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.2e-68 265.0 302 47.4
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.5e-64 252.3 303 43.2
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-64 251.9 388 38.9
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.4e-61 241.1 231 52.8
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 8.4e-60 236.5 187 61.0
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 6.0e-58 230.3 204 53.9
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.1e-57 227.3 300 43.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 2.8e-55 221.5 203 54.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 5.9e-53 213.8 205 52.7
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.2e-47 195.3 178 53.9
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 3.7e-47 194.5 175 58.9
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.0e-41 174.9 903 23.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-40 170.2 618 25.6
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 6.1e-34 150.6 150 55.3
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.3e-32 144.8 154 46.1
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 2.8e-31 141.7 109 58.7
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-29 136.3 145 51.7
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 7.7e-29 133.7 467 27.6
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.2e-28 132.1 189 40.7
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 2.4e-22 112.1 73 64.4
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 9.1e-22 110.2 115 47.0
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 3.2e-19 101.7 100 48.0
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 6.3e-15 87.4 55 70.9
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 8.3e-15 87.0 85 49.4
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 5.9e-13 80.9 74 55.4
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.7e-12 79.3 88 46.6
Actinidia10458 Actinidia chinensis HOM05D000038 ORTHO05D053114 1.8e-06 59.3 44 65.9
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 9.2e-06 57.0 43 60.5


User provided reference genes

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