Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 5.2e-251 870.5 429 100.0
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 4.2e-152 542.0 391 69.8
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 4.2e-152 542.0 390 69.7
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 7.2e-144 514.6 389 67.1
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 4.4e-141 505.4 390 66.7
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.3e-140 503.8 390 64.4
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 4.5e-138 495.4 391 64.2
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 4.5e-138 495.4 387 66.4
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 1.5e-136 490.3 391 63.9
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 4.0e-134 482.3 435 60.0
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.1e-131 474.2 386 63.7
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 9.2e-131 471.1 389 61.4
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.7e-129 466.8 388 62.1
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 2.5e-128 463.0 386 61.9
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 2.1e-127 459.9 386 62.2
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 4.0e-126 455.7 390 61.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 2.6e-125 453.0 393 59.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 4.4e-125 452.2 385 61.8
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.8e-125 451.8 386 61.4
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 7.5e-125 451.4 386 61.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 4.9e-124 448.7 390 59.7
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 6.0e-122 441.8 393 59.3
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.6e-121 438.3 386 60.4
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 7.3e-120 434.9 393 56.2
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 3.6e-119 432.6 396 59.1
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 2.9e-116 422.9 394 57.9
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 2.9e-116 422.9 392 57.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 5.4e-115 418.7 392 57.4
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 9.2e-115 417.9 391 58.8
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 9.2e-115 417.9 387 56.8
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.9e-113 412.5 394 56.9
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 1.1e-112 411.0 402 56.2
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 9.5e-112 407.9 389 57.1
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 1.2e-111 407.5 388 55.9
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 1.2e-111 407.5 394 56.1
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.2e-111 407.5 391 54.5
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.6e-111 407.1 380 57.9
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 2.1e-111 406.8 380 56.3
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 2.1e-111 406.8 392 57.9
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 2.8e-111 406.4 399 53.9
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 2.8e-111 406.4 393 54.5
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 1.1e-110 404.4 387 56.8
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.0e-110 402.5 394 55.8
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 5.2e-110 402.1 388 55.9
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 6.8e-110 401.7 391 54.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 8.9e-110 401.4 393 55.0
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 1.2e-109 401.0 387 55.8
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 9.9e-109 397.9 397 53.7
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.7e-108 397.1 388 55.2
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 2.2e-108 396.7 386 55.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 2.9e-108 396.4 390 54.6
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 5.4e-107 392.1 392 55.6
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 7.1e-107 391.7 391 56.0
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 8.7e-105 384.8 379 54.9
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 1.1e-104 384.4 398 52.8
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 5.6e-104 382.1 398 52.3
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 4.8e-103 379.0 386 52.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 1.5e-101 374.0 442 49.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 4.9e-100 369.0 384 52.3
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.4e-99 367.5 377 52.8
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 3.5e-98 362.8 395 53.9
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 4.6e-98 362.5 382 51.6
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 7.8e-98 361.7 378 52.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 1.9e-96 357.1 386 51.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 4.8e-95 352.4 379 49.9
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.4e-94 350.9 380 50.8
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 5.3e-94 349.0 379 50.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 5.3e-94 349.0 427 45.7
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 1.2e-93 347.8 382 51.0
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 2.0e-93 347.1 379 50.4
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 2.6e-93 346.7 381 49.9
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 4.5e-93 345.9 380 49.7
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 1.3e-92 344.4 381 50.1
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 2.9e-92 343.2 382 50.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.9e-92 342.4 371 53.1
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 1.4e-91 340.9 383 49.3
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 3.2e-91 339.7 388 49.2
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 5.4e-91 339.0 382 50.3
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 2.7e-90 336.7 385 50.4
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 4.6e-90 335.9 382 50.0
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 7.9e-90 335.1 390 50.5
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 1.3e-89 334.3 387 48.8
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 4.8e-87 325.9 386 47.9
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 4.5e-85 319.3 385 47.3
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.5e-83 312.4 378 46.8
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 1.6e-82 310.8 397 45.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 5.7e-80 302.4 364 47.8
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 7.6e-77 292.0 334 52.7
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 1.2e-74 284.6 368 46.7
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.5e-72 277.7 176 79.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-67 260.8 421 41.3
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 2.0e-53 214.2 335 42.7
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 3.8e-52 209.9 174 57.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.7e-44 184.5 366 38.5
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 4.2e-43 179.9 386 32.9
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.0e-40 171.0 108 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.3e-39 168.3 402 33.3
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.1e-38 162.2 161 49.1
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.5e-35 154.1 247 37.7
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.8e-31 140.6 386 30.6
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 3.7e-31 140.2 89 68.5
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.1e-30 137.1 85 80.0
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 4.5e-29 133.3 130 48.5
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.7e-28 131.3 133 52.6
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 6.8e-25 119.4 75 78.7
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.8e-21 105.9 58 77.6
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.3e-17 94.4 89 61.8
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 3.4e-16 90.5 100 46.0
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.3e-15 85.9 70 64.3
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.4e-14 84.3 55 81.8
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-13 82.0 63 66.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-13 82.0 63 66.7
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.7e-12 78.2 63 65.1
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.6e-12 76.3 55 72.7
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 8.6e-12 75.9 50 74.0
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.3e-11 73.6 54 74.1
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-09 68.9 42 61.9
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 1.8e-09 68.2 56 58.9
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 2.0e-08 64.7 56 55.4
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 3.7e-07 60.5 43 69.8


User provided reference genes

Program Settings